Etheostoma spectabile (orangethroat darter): 116690354
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Entry
116690354 CDS
T08457
Symbol
sf3b1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116690354 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116690354 (sf3b1)
03036 Chromosome and associated proteins [BR:
esp03036
]
116690354 (sf3b1)
Spliceosome [BR:
esp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116690354 (sf3b1)
Complex B
116690354 (sf3b1)
Complex C
U2 SnRNP specific factors
116690354 (sf3b1)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116690354 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
Menin
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
116690354
NCBI-ProteinID:
XP_032373128
LinkDB
All DBs
Position
5:complement(35927032..35945593)
Genome browser
AA seq
1343 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGDQGVGLDSTGFYDQEIYGGSDSRFAGYVTSI
AANEQEEDEEEDSTTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPPKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAASQAAAAAKRKRRWDQTADQTPTNTTPKKISTWDQADSSSETPGHTPGHTP
AHTPSSTRWDETPGRPKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGA
TGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPAS
QMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDEL
DAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNL
PFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAR
EFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLID
EDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSL
LPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTI
SALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANY
YTREVMLILIREFQSPYDEMRMIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMA
LDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADI
DHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKS
AKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVI
GMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLE
LLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS
PFTVLPALMNEYRVPELNVQNGVLKSLSFLXEYIGEMGKDYIYAVTPLLEDALMDRDLVH
RQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPC
RMLQYCLQGLFHXARRCADVYWKIYTLHFIGSQDALIAHYPQVYNDDKNMYVRYELATTS
CKYEFTALHFSLLPSTFPLHCRL
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagacatcgaggcccagatcctggagatccagggg
atgaaggccaccctgctggaggagggagatcagggcgtgggcctggactccaccggcttc
tatgaccaggagatctatggaggcagcgacagccgctttgctggttatgtcacttcaatc
gctgccaatgaacaggaggaagatgaagaagaggactcgacaacaagcttgttgggccag
aagaagccagggtaccacgcaccagtggcaatactcaacgccattcctcagtcagacgag
caatacgacccatttgcggagcatcgtccaccaaagatcgcagagcgggaagatgaatac
aaagcccggcgcagacagatgatcatctcacccgagcgtctcgacccttttgcagatggg
ggcaaaacgccggaccccaagctgcaagtcaggtcgtacgtggacgtcatgttggagcag
aacctgtcaaaagaggagagagagattcgtcaacaactggcagagaaggccaaatctggg
gacctgaaagctgtcaacgggtccgctgcctcacaagccgctgctgccgcaaaacgtaaa
cgtcgctgggaccagacagccgaccaaaccccaactaatactacgcccaaaaagatttcc
acctgggaccaggccgactcctcctctgagactccaggacacacccctggacacaccccc
gcacacacaccttcaagcacccgatgggatgaaacccctggccgccccaaaggcagcgag
accccgggggccactcccagtacccgcatgtgggaccccactcccagccacacacctgct
ggcgctgccacccctggcagggacacgcccggccatgccacgcccgggcacggtggtgcc
acaggaagcgtacgcaagaaccgctgggacgaaaccccaaagaccgaaagggagaccccg
ggacacgggagtggctgggcagaaacgccacgcacagacagaggagatgagtccgtcggc
gagactccgaccccaggggccagtaagaggaagtctcggtgggacgaaacccccgccagt
cagatgggttcttcaacaccactacttaccccaggaaaaacgcccataggcacgccagct
atgaacatggctaccccgacaccagggcacctcatgagcatgactccagagcagctgcag
gcgtggaggtgggagagagagattgatgagaggaaccggcctctcacagatgacgagctt
gatgccatgttcccagagggatataaggtcttgcctccaccagcaggctacgtgccgatc
cgaactccggcccgtaagctgtcggccacgcctacgcccatcggaggcatgacgggcttc
cacatgcaagtggaggaccgcaccacgaaacagatgaatgaccagccctcaggaaacctc
cccttcctcaaaccggatgacatccagtattttgacaaactgctggttgaggtggacgaa
tccacactgagccctgaggagcagaaagagagaaagatcatgaagttgctgctgaaaatt
aaaaacggaacaccgcccatgagaaaggccgctctgcgtcagatcacagataaagctcgt
gaatttggagctggccccctgttcaatcagatcctgccattactcatgtcgcccaccctg
gaggaccaggagcgtcatttgctggttaaagtcattgaccgcattctctacaaactggat
gacctggttcgaccatacgtacacaagatcctggtggtgattgagcccctgctgattgat
gaggactactatgccagagtagaaggcagagaaatcatctccaacttggcaaaggctgcc
ggtttggctacgatgatctccacgatgcgacctgatatcgacaacatggacgagtacgtc
agaaacaccacagcccgagccttcgccgtggtggcctctgctcttggtattccctctctc
ctgccgtttctcaaagctgtgtgcaaaagcaagaagtcgtggcaggccaggcacacgggc
atcaagatcgtgcagcagatcgccatcctcatgggctgcgcaattctgccccacctgcgc
agcttggtggagatcatcgaacacggtctggtggacgagcagcagaaggtgaggaccatc
agtgccctggctatagctgccctcgctgaagctgctacgccctacggtatcgaatccttt
gactcggtcctcaagccgctctggaagggtatcagacagcacagaggaaagggtctggct
gcgttcctgaaagctatcggatacctgatcccactgatggacgccgagtacgcaaactac
tacaccagagaggtgatgctgatcctcatcagggagttccagtccccttacgatgaaatg
agaatgattgtgctcaaggtggtgaagcagtgttgtggcactgacggtgtggaagccaac
tacatcaagacagagattctgccccccttcttcaagcacttctggcagcaccggatggct
ctggacaggcgcaactacagacagttggtggacaccacagtggagctggccaacaaagtg
ggcgcagcagagatcatttcgcgcatcgttgatgacctgaaagatgaggcagagcagtac
agaaagatggtgatggagaccatcgagaagatcatgggcaacctgggtgcagctgacatc
gaccacaagctggaggagcagttgatcgacggtatcctgtacgccttccaggaacagaca
acagaggactctgtgatgcttaatgggtttggcacggtggtgaatgccctcgggaagcgt
gtgaaaccctacctgcctcagatctgcggtacggtgctgtggcgtctcaacaacaagtcc
gccaaagtccgtcagcaggctgccgacctgatctcccgcacggccgtggtcatgaagact
tgccaggaggaaaagctgatgggtcacttgggagtggtgctgtacgagtacctgggagag
gagtacccggaggtgctgggtagcatcctgggagcattgaaggccatcgttaacgttatc
ggtatgcacaagatgactccgccaatcaaagacctgcttcctcgtttgactcccatcctg
aagaacagacacgagaaggtgcaggagaactgtatcgaccttgtgggcaggatcgctgac
aggggagctgaatatgtgtcagccagggagtggatgaggatttgttttgagctgctggag
ctgctgaaggctcacaaaaaggccatccgcagagctaccgtcaacacgtttggttacatt
gccaaagccatcggcccccacgatgtcttggccacgctgctcaacaacctcaaggtccag
gagcgtcagaaccgagtctgcaccaccgtggccatcgccatcgtggccgagacctgttcc
ccgttcaccgtgctgccggcgctcatgaacgagtaccgcgtgccggagctcaacgtgcag
aacggcgtgctcaagtccctctccttcctgntcgagtacatcggagagatgggcaaagac
tacatctacgccgtcacaccgctgctggaggacgcgctcatggaccgagacctggtccac
cgacagacggccagcgccgtggtccagcacatgtccctgggggtctacggtttcggctgt
gaagactccctcaaccacttgctgaactacgtgtggcccaacgtgtttgagacgtcgcct
cacgtgatccaggcggtgatgggcgccctggaggggctgagggtcgccatcgggccctgc
cgcatgctgcagtactgcttacagggtttgttccatncggccaggaggtgcgcagacgtc
tactggaagatctacactctccatttcatcggctcgcaggacgccctcatcgctcactac
ccgcaggtctacaacgacgacaagaacatgtacgtccgctacgaactagctactacgtct
tgtaaatatgaattcactgctctccacttttctctcctcccctcaactttccctctacat
tgtcgtctctaa
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