Etheostoma spectabile (orangethroat darter): 116691509
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Entry
116691509 CDS
T08457
Symbol
cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116691509 (cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116691509 (cnot3)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116691509 (cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116691509 (cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
116691509
NCBI-ProteinID:
XP_032375088
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All DBs
Position
6:10436241..10446517
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AA seq
910 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSIPVDSIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNVEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGSPAVPSSNSLIGSFSSAVQQHQHQP
AQQQQQPQPPNQPQQQQQPPQTKPSVPSNNNPSPPSNPLLPASPAPSLPTPSTPSSLALN
SQSQLTSEPTPASGLGLGLGLGLSKIGMTGTSSANQMSGLGLGGHPSSLNTMAGLISGST
PAPYAQAAASGGLGLSSTTQSSISENSTSILTSGSSGVTTNGVGIGLGLLGSSPAHSSLS
GSILGLVPGQNVAPGASQVPPSSVSTTPGVVGMMGSSGGNISVVGGVGVNAAPARPPSGL
KQNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQPMDNGPSLISSITLPPSSP
SPSFSDSTPGGGSLLNGPHSYTQASEALKAPEPLSSLKAMAERAALGSGLDGEIPNLHLT
DRGRNDIFSGSSAAPGTPAAPQQSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWT
HMPHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGTKA
QYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFE
YRYLEDRDLQ
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgagatcgatagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagacatctggcaaaagctccataatgcagctaatgcaaaccag
aaggaaaaatatgaggctgacctcaagaaagagattaaaaaactacagcgattgagagat
caaataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagtcgagaat
cgcaaacttatagagacgcaaatggagcggttcaaggtggtggaacgtgaaacaaaaaca
aaagcctactcaaaagaaggcttggggcttgctcagaaagtggacccagctcagagggaa
aaagaggaaacaggacagtggctaacaaatacgatagacactctaaatatgcaggtggat
cagtttgaaagtgaggtggaatctctttcggttcagacgagaaagaagaagggtgataag
gataagcaagatcgtattgatgagctcaagcggttgattgagaggcatcgattccacatt
cgcatgttagagaccattttacgaatgctagataatgactcgataccagtggattcaatc
cagaagatcaaggatgatgttgaatactacattgattcttcgcaagacccagactttgag
gagaacgagttcttgtatgacgacttagacctggaagacatccctgcagcattagttgca
acgtctccgtcaggtcagggcaatgtggaggatgagatgtatctccactccagcagcact
cccacttccacaacctcttcttcacccattcctccatccccagccacttgcactgctgag
aactcagaggacgataagaaaaggggacgatcgacagacagtgaagttagtcagtcacct
gtgaagaacggcaccccatccttgctatcttccttctcctcctccaccacctctgggtcc
tcctcgtcctcctcacttgtgtccatggcgagtgttgttggaggcagtcccgcggttccc
tcaagcaacagtcttatagggagcttcagcagtgcggtgcagcaacatcagcatcaacct
gcacaacagcagcaacaacctcagccaccaaaccaaccacagcagcagcagcagccacct
cagacaaaaccctctgtcccctcaaacaacaaccccagcccaccaagcaaccctcttctc
ccagcctcacctgccccttctctccccacacccagcacacccagttcattagctctgaac
tctcagtctcagcttacatctgagcccaccccggcatccggtttgggactcgggctcggg
ctgggattgagcaaaattggcatgacaggaaccagcagtgccaaccaaatgtctggtctg
ggcctgggtggccacccctcttctttaaacacaatggcagggctcatttcgggctccaca
cctgccccttacgctcaggcagcagcttcaggaggcttgggtttgagcagtaccacccag
tccagcatttcagagaacagcacttccatcctcacctctggctccagtggagtcacaacc
aacggagtggggatagggctcggtttgctaggttccagcccggcccacagctctttgagt
gggagtattttgggtctggttcctgggcaaaatgtagcccctggtgcctctcaggtgccc
ccaagttctgtcagcactacccccggagtagttggcatgatgggaagcagtggagggaat
atcagcgtggttggaggagtaggggttaatgctgctcctgctagaccacccagtggactg
aagcaaaatggaagcacaagttacagtgctgtagtggcagagagctccacagaatcagct
ctaagcacaccgagccagtcacaaagcagccaaccctcatctctcagttcttcaaccagt
cagccgatggacaatggtcccagtttaatcagctccatcactctgcctcccagctctccg
tccccctcgttctcagacagcacacctggaggagggagtcttctcaacgggccccactcc
tacacacaggcctctgaggccctcaaggcccctgagcctctcagttctctgaaggcgatg
gctgaaagagcagcgctgggatcaggcctggacggagagattcccaacctgcacctaaca
gacagaggtcggaacgatatcttctctggttcatctgcagcgcccggcactccagccgcc
ccccagcagtccgtgtcggaagtcagcatccccccctcgctcggggtctgtccacttggc
cccaccccgctccccaaagaccagctctaccagcaggccatgcaggaatccgcatggaca
cacatgccacacccttctgactctgagaggatcaggcaatacctgatgaggaatccatgt
cccacattgccgttccatcatcagataccgccccaccactctgactctatagagttttac
cagagactgtccacagaaactctctttttcatcttctactacctagagggcaccaaggct
cagtatctgtctgccaaggctctgaagaaacaatcttggaggtttcacaccaagtacatg
atgtggttccagagacatgaggagcccaagactatcactgatgaatttgaacagggcact
tacatttactttgactatgagaaatggggccagaggaagaaggaggggttcacctttgag
tacaggtaccttgaagacagagatctgcagtga
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