Etheostoma spectabile (orangethroat darter): 116692048
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Entry
116692048 CDS
T08457
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116692048
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116692048
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116692048
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116692048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
116692048
NCBI-ProteinID:
XP_032375923
LinkDB
All DBs
Position
7:complement(3765255..3791674)
Genome browser
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVAFQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DTGAVLCDEIICEEIKECANPLIQSGECCPICPADASAPIETIGAKGQKGEPGEIADVVG
PKGPPGPMGPPGEQGVRGEAGAKGDKGNAGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPAGALG
PRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGSAGENGAPGPMGPRGLPGERGRSGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGSEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPVGPQG
PPGPAGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKAGEKGLVGRPGVRGLSGKDGETGPAGPPGPSGPAGERGEQGQPG
PPGFQGLPGPSGAPGEAGKPGDMGVSGEAGSPGAVGPRGERGFPGERGGAGAQGLQGPRG
LPGTPGTDGPKGAIGPAGAAGPQGPPGLQGMPGERGTGGIPGPKGDRGDNGQKGPEGAPG
KDGGRGLTGPIGPPGPSGPNGAKGETGPSGQTGAAGARGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGESGQKGEAGSSGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGPVGPAGSAGKDGPKGARGDAGPPGRQGDAGLRGAPGAQGEKGEAG
EDGPPGADGPSGPQGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGASGSPGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGATGVKGERGNTGPSGAPGAPGSPGAPGPVG
PLGKQGDRGESGAQGPAGPSGPAGARGMAGPQGPRGDKGESGETGERGQKGHRGFTGLQG
LPGPPGSPGDAGAAGPAGPSGPKGPSGPSGPAGKDGSNGQPGPIGPPGPRGRSGEGGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNSQIETLRSPDGSQKNPARTCRDLKLCHPEWKSGNYWVDPNIGSTADAIKVFCNMETG
ETCVNPSIAEVPKKNWWTSKSKDRKHVWFGETMNGGFHFNYAEDGPVANAASVQLTFLRL
LSTEASQNLTYHCKNSIAYMDQATGNLKKALKLQGSNDVEIRAEGTSRFTYSVLEDGCKK
HTDQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcattccaagttgtttta
ctatccgtggtcagatgtcaggaagaggacgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgacaaggatgtgtggaagcccgagccgtgtcgtatctgtgtgtgt
gacaccggagcggttctgtgtgatgagataatctgcgaggagatcaaagaatgtgccaac
cctctcatccaatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gaaacgattggtgctaagggccagaaaggtgaaccaggagagattgcagatgttgtagga
ccaaagggaccaccaggccctatgggccccccaggtgaacagggagtacgtggagaagct
ggcgctaaaggtgataagggaaatgcaggacctcgtggaagagatggtgagcctggcacc
cctgggaaccccggaccccctggcccacccggaccaccaggacttggagggaattttgct
gctcagatggctggaggttttgatgagaaggctggaggtgctcagatgggtgtgatgcag
ggaccaatgggtcctatgggacctcgtggcccccctggacctagtggagctcctggacca
cagggtttccaaggtagccctggagaggctggagagcctggcccagctggagcattggga
cctcggggaccgcccggaccttctggaaaacctggaagcgacggcgaagctggcaaacca
ggaaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggtcatcctggtctggatggcgctaaggga
gaaactggtgccgcaggagccaagggcgagtctggttctgcaggagagaacggcgccccc
ggacccatgggcccacgtggtcttcccggtgagagggggcgttctggagctgctggagct
gcaggtgcccgtggaaatgatggtttgcccggtcccgctggtccacctgggcctgttggt
cctgctggagctccaggtttcccaggatctccaggagccaagggagaagctggtcctact
ggagcccgtggatctgaaggagcacagggaccccgcggagaggccggaaccccaggatct
cccggacctgccggagcatcgggtaaccccggtactgatggtattcccggagctaaagga
tctgctggtgcttctggtattgctggtgctcctggattccccggcccccgtggcccacct
ggaccacagggagctacaggacctctggggccaaaaggacagtctggagaccctggtctt
cctggattcaaaggtgaagctggaccaaagggagagcttggccccgttggtccccaaggt
cctcctggccctgctggtgaagaaggaaagagaggtgcaagaggagagcctggaactgct
ggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgcaggtgctaagggtgctcctggtgaccgtggtgttccgggtgctgctggg
cccaaaggtgctactggagaccctggacgcacaggagagtcaggtctccccggcgcaaga
ggtcttaccggccgtcccggagatgctggtcctcaaggcaaagttggtccctctggtgct
tctggtgaggacggtcgcccaggcccacccggccctcagggagcccgtggacagccagga
gtgatgggattccctggaccaaagggagcaaatggtgaagctggaaaggcaggagagaaa
ggtcttgtgggtcgccctggtgtgagaggtctgtctggaaaagatggtgaaactggacct
gctggacctcctggcccttctggacctgctggagagagaggagagcaaggacagcctgga
ccccctggcttccagggtctgcctggaccatctggtgccccaggagaggctggaaaacct
ggagacatgggtgtttctggagaggccggaagtcctggtgctgtcggacccagaggtgaa
cgtggtttccctggtgaacggggtggtgctggagctcagggtcttcagggacctcgtgga
cttcctggaacacctggaacagatggacccaagggagccattggaccagctggtgctgct
ggaccccagggaccccccggcctgcagggtatgcctggagagagaggaactggtggcatc
ccaggacccaagggagacagaggtgacaacggacagaaaggacctgagggagctcctgga
aaggatggtggtagaggtttgactggtcccattggtcctcctggcccatctggacccaac
ggcgccaagggtgagactggaccctctggccaaaccggtgctgctggtgctcgtggtgct
cctggtgaccgcggggaagttggtcctcctgggccggctggctttgctggacctcctggt
gcagatggtcagcctggtgccaaaggagagcttggtgagtctggacagaagggagaagct
ggttcttctggacctcagggaccatctggggctcctggacctgtgggacctactggtgta
actggacctaaaggagcacgtggtgctcagggagctcctggtgccactggtttccctggt
gctgctggcagagttggatctcctggccctaatggtaaccctggccctgttggccctgct
ggttctgctggaaaagacggaccaaagggtgctcgtggtgatgctggccccccaggaaga
cagggagacgctgggcttcgtggagctcctggcgcacaaggagagaagggagaggctgga
gaagatggaccccctggtgctgatgggccttcaggtccccagggtctgggcggatctcgt
ggtattgtcggtttgcctggtcagcgtggagagagaggcttcgctggtctgcctggacct
tctggagagcctggtaaacaaggagcttctggttctcctggcgatcgcggacctcctgga
cctgttggaccccctggacttactggacctgctggagagactggaagagagggtacccct
ggatcagatggacctcctggtagagatggagctactggagtcaagggagagcgaggtaac
actggtccctctggtgcccctggagctcctggttcccctggtgcacccggacctgttgga
cccctcggcaagcagggagacagaggagagagtggtgctcaaggacccgcaggaccctca
ggccccgctggagctagaggaatggctggaccccaagggccacgtggagacaaaggagag
tctggtgagactggagagaggggacagaagggtcaccgcggtttcactggtctgcaaggt
cttcctggacctcctggttcccccggagatgctggagctgccggacctgccggaccaagc
ggacctaagggaccatctggaccatccggacctgctggtaaagacggatcaaatggacag
cctggccccattggaccccctggacctcgtgggcgttctggagaaggtggtcctgctggt
cctcctggtaacgccgggccccccggtcctcctggtcctcctggccccggcatcgacatg
tctgctttcgcaggtctgggtcagactgagaagtcccctgatcccctcaggtacatgagg
gccgatgaggcctccagctccctgaggcagcacgacgtcgaggtcgattccacactcaag
tccctcaacagccagattgagaccctgcgcagccctgacggcagccagaagaaccctgct
cgcacctgcagagacctgaaactgtgccaccctgagtggaagagcggtaactactgggtt
gatcccaacattggcagcacagccgatgccatcaaggtcttttgtaacatggagacagga
gagacctgcgtcaacccaagcatcgccgaggtaccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacgtctggttcggagagaccatgaatggaggattccactttaac
tacgccgaggacggccctgttgccaacgctgccagtgtccagctgaccttcttgaggctt
ctgtccactgaggcatcccagaacctcacttaccactgcaagaacagcatcgcctacatg
gaccaggccacaggcaacctgaagaaggctttgaagctgcagggctccaacgatgtggag
atccgcgcagagggcaccagtcgcttcacatacagcgtgttggaggatggctgcaagaaa
catacagaccagtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtggacattgctcccatggacatcggaggagcggatcaggagttcggagtggaa
gtaggcgcagtctgcttcttgtaa
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integrated database retrieval system
