Etheostoma spectabile (orangethroat darter): 116692306
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Entry
116692306 CDS
T08457
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
FN3_Tor_3rd
DUF4959
SPOR
Motif
Other DBs
NCBI-GeneID:
116692306
NCBI-ProteinID:
XP_032376375
LinkDB
All DBs
Position
7:21548563..21587866
Genome browser
AA seq
1579 aa
AA seq
DB search
MSPHLLPSSSSSFWLMLCFLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQGYKVRVR
PISEVPQPELMLTTTRGRATVAGLDSSQEYTLQVLVLNGTTERLLAKRRFTMEGLLEEEM
IRSGSREQKKKMLPGGSGSGDLDDVTEALLGVPTILYPDPTAAAAAAAATTETPAIETPS
QLPDEAPEKTSKEKRKRKKEKERDRSKVENKEEQGTTQGKATEEKPRKTPFPTQPVTGVS
PRKPFECDSDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLMTPFHIGPDHIQIGLTQYSG
DPRTEWQLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEENMRAEAGTRSDTPFFLV
LLTDGKSQDDAIAAANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVNDFPLLS
KLVARLVHILCGRIEDRGISKRMEPGPTADPALSYPSPTDLRFSELGSREVKLHWTNPSK
PVQQYRVVYHSAEGQSPQEVVLAGSESTVLLEDLSSQTLYHVSIFPVYEDNVGLALRGTV
TTLPLAMPANLEVTPASYSTLRVSWGAAPGATQYMVLYSALNHGEPDDAKEEKFSADQTV
VELAGLLPATDYSVTLYALYDEDPSDPVTAVATTFPLPQPMSVQFPVVSHSMMRVSWVPG
AVDVPSHRITYSTNHGSDVKQVDVTGLNSVVVQNLSSLSRYLVSVQSLYSQGLSAALTSN
VTTLKVPSPSDLRVTNFSGSDITVRWEAAADDVVSYLIKWISLGGGDLRQLRVSGESEGA
ILEGVEDDKEYQISLSALYRDGAQSEAVATRYSTLSGGSPSSITVSEETAVSLVVSWVPP
NAHVLQYRVSYTALTAAETQDNTMVVPGSEKRVLLESLQPDTRYSILVTAEYRNREGGSG
SAQGKTTSLRVSSVSVVRSDHSSICVSWRPVSTVDGYRIVIQSVKDKQTKEETVDESSSS
HCFTDLEPETLYRISVHSLLSSAEGAAVSILHPTAPAPARIPIHPRMYPIHNEVCPEVTI
RNSIVKGFDMMEAFGLTKNAHSSVEGVAAEPFVFNTLPTYTLYRDVQLTQSTKFIHPAGF
SPEHTISITFRMLQETPREPFALWQLTDNDFQPKMGVVLDPTTKRLVYFSLDYRGEVQEL
TFDQSQVYRLFYGSFHKVHLSVSQVSVSLSVDCQRVGERPARPLGNLPTDGFEMLGKLVK
TRGPNSGSAPFQLQSFEIVCNTTWALEDTCCDLPGVRDVESCPAPAYTCTCSSDIPGAPG
SPGPTGKPGPRGEKGDKGEQGQKGEVGPPGKPGFEGGLGPLGNTGPRGMAVQGKVGPPGA
RGERGDPGRPGVQGLPGPPGPKGEEGIPGPKGIRGLEGNIGEPGLTGPRGFQGMPGHPGP
IGERGYSGPVGPTGLPGGKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVLKLDMFINEK
NRKPAPIEEPVAPPGEPGIPGPKGQPGARGTLGHVGPRGRPGKAGYPGEQGRRGMPGGKG
DPGPNVQGPAGIKGFAGPPGESKLGIPGPKGEDGKAGPAGITGPPGQPGEVGPPGVCDSS
GGCHRVPQQTEDPYYGYQP
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcacctccttccttcatcatcatcatctttctggctaatgctgtgtttcctg
ctgtcctcaggggtccatggccaaggtcgtctcaagctgacggtcctgtctgaggacaga
ctgcagatgaaatggaaggaggctgacggacccgttcagggctacaaggtccgagtgaga
cccatctcagaggtgccacagccagagctgatgctgaccaccacacggggccgggcaacg
gtggcaggactggactccagtcaggaatacaccctccaagtcctcgtgctcaatgggacg
acagaaagacttctggcaaagcgacgattcaccatggagggtctgctggaagaggaaatg
atccgcagcggtagtcgagagcagaaaaagaagatgttgccaggcggatcagggtcagga
gacctggacgatgtaacagaggctttgttgggtgtaccaacaattctgtatcctgacccc
accgctgctgctgctgctgctgctgctactacagagaccccagcaatagaaaccccctcc
cagctccccgatgaggccccagagaaaaccagcaaagaaaagaggaagaggaagaaagaa
aaagagcgggatcgttctaaagtggagaataaggaggagcaggggacgacacagggcaaa
gccaccgaggagaaaccccggaagacacccttccctacacaaccggttacaggtgtgtct
ccaaggaaaccatttgagtgtgacagcgatgcagcggccgacatcatgttgttggtggac
ggctcctggagcattggacgcactaacttcagacgggtcagggacttcttggagggcctg
atgacacccttccacattgggccggatcacattcagatcggtctgacccagtacagtgga
gacccccgcacagagtggcagctcaacaactttaccactaaagaccagctgttggaggct
gtaaggaatttcagatataagggaggaaacacatttacaggccaggcgctgctccatgtc
atggaggagaacatgagggccgaggcaggcacgaggtcggacacaccttttttcctggtc
ttgttgaccgatgggaaatctcaggatgacgccattgctgcagcaaaccggctgaagaat
gccggcgtggagatcatcgctgtaggtgtaaagaatgctgacgaggctgagttgagacaa
gtggcatcggagccggtagatctgaacgtctacaatgtgaatgacttccctctgctcagc
aaactagtggcacgactggtccacattctgtgtggaaggatagaggaccgtggcatctca
aaaagaatggagcctgggcccacagccgacccagccctctcctaccccagtcccactgat
ctgcggttctctgaactgggctccagagaagtaaagcttcactggaccaatccttctaag
ccagtccaacaatacagagtggtctaccacagcgcagagggtcagagtccacaggaggtg
gttttggccggctcagagtccactgtgctgctggaagacctctcctctcagacactgtac
cacgtgtccatcttccctgtgtatgaagacaatgttggccttgcgctcagaggaactgtc
actacattgcccctggccatgcctgccaacctggaggtgactcctgcctcttacagcaca
ctgcgagtgagttggggtgcagcgcccggtgcaacacagtacatggtgctgtactcagca
ctcaaccacggagagcctgatgatgccaaggaggagaaattcagtgcagaccagacagtg
gtggagctggcggggttactgccggcaacagactactctgtcactctctatgccctgtat
gatgaggatcccagcgaccctgtcactgctgttgccaccacattccctctcccacagccg
atgagtgttcagttcccggtggtcagccacagtatgatgagggtgagctgggtgcccgga
gccgtggacgtccccagccacagaatcacctacagcaccaaccacggcagtgacgtcaag
caggtggatgtaaccggactgaactctgtggtggtgcagaacctctcctctctgtctaga
tatctggtttcagtccagtctctctactcgcaaggcctgtctgcagcactgaccagtaac
gtcaccacactgaaggtgccgtccccatcagacctcagagtgactaatttctcaggcagt
gatatcaccgttcgctgggaggcggcagctgatgatgtcgtctcctacctcatcaagtgg
atctccctcggtggaggagacctgagacagctgagggtgagtggtgagagtgagggggcg
atcctggagggggtggaggacgataaggaataccagatctctttgtctgcactgtatcga
gacggagctcagagtgaagctgtggccacgcgctatagcacattgtctggtggaagccca
tccagcataacggtctccgaggagacagcggtcagcttggtggtcagctgggtgcctccc
aacgctcatgtcctccagtatcgtgtgtcttacaccgcactgactgcagctgaaacccag
gacaacactatggtggttccaggtagtgaaaagcgagtgttgctcgagtctttacagcca
gatacacgttacagcatcctggtcaccgctgagtaccgcaacagagaaggaggcagcggt
tcagctcagggcaaaaccaccagtctgcgagtaagcagcgtgagtgtggttaggtcagac
cactccagtatctgtgtgtcttggagacccgtgtctactgttgatggatatcgtattgtc
atccagtccgtcaaagacaagcaaacaaaggaagaaactgtcgacgagtccagcagcagc
cactgtttcactgatctggaaccagagactctatatcgcatcagtgtgcactcgctgctc
agctcagcagagggcgctgccgtctccattctccatccaacagccccggctcctgccaga
attcctatccatccccggatgtaccctatccacaacgaagtctgccctgaagtcaccatc
agaaacagcattgttaaaggatttgacatgatggaagcatttggtctgactaagaatgct
cactcgtctgtggagggcgtggcagccgagccttttgtcttcaacactctccccacctat
actttgtacagagacgtccaactgacacagagcaccaagtttatccatcctgcaggtttc
tctccagaacacaccatcagcatcaccttccgcatgttgcaggaaacacccagggagccc
ttcgccctctggcagctcactgacaatgacttccagcccaagatgggagtggtgctcgac
cctactaccaagcgtctggtgtacttcagtctggactacaggggagaagtgcaggaactg
acctttgaccagtcgcaggtctacagactgttctatggcagttttcacaaggttcacctg
tctgtcagccaggtgagtgtgtccctgtctgtggactgtcagcgtgtgggtgagaggcct
gcccgtcctctaggcaacctgccaactgacggctttgagatgctgggaaaactggtgaag
accagaggacccaatagtggatcagcaccgttccaactgcagtcctttgagattgtctgt
aacactacgtgggctttagaggatacctgctgtgacctgcctggagtgagagatgtggag
agctgtcctgccccggcgtacacctgtacctgttcctctgacatccccggagctcccggt
tcccctggtccgactggtaagccaggtcctcgtggggagaaaggtgataagggagagcaa
ggccaaaagggggaggtgggtcctccaggaaagcctggatttgagggaggtcttggacct
ttgggcaacacaggaccccgaggcatggccgtgcagggtaaagtgggtccacctggtgca
agaggggaaaggggagatcctgggcgtccaggggtccagggtttaccaggacctccaggt
ccaaagggggaagaggggattccaggccccaagggcattagggggctcgaagggaacatt
ggtgaaccaggccttactggacccaggggtttccaaggaatgccaggacacccaggacct
ataggagaaaggggctactcagggcctgtgggacctacgggtctgccagggggaaaaggg
gagcgaggagagaagggggaacctcagtctatggccatgatctaccaactggtcacacag
gcctgtgagcaactagtacataaggaagtgttgaagcttgatatgtttattaacgagaaa
aatcgaaagccagctccaattgaggagccggtggcgccccccggggaacctggtatacca
gggcccaagggccaaccaggcgccaggggcaccctggggcatgtcggcccaagggggaga
cctggcaaagctggatatccaggagaacagggaaggagaggtatgccaggggggaagggt
gatccaggacccaatgtgcaggggcccgcagggatcaaaggatttgcaggccctccaggg
gagtccaagttgggaatcccaggtccaaaaggagaggatggtaaggcaggacccgcaggg
atcaccggacctcctggacagccaggcgaggttggaccgccgggggtgtgtgacagcagt
ggaggctgccacagagttccccagcaaacagaagacccttattatggctaccaaccttga
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integrated database retrieval system
