Etheostoma spectabile (orangethroat darter): 116692521
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Entry
116692521 CDS
T08457
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20 isoform X1
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116692521 (ddx20)
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116692521 (ddx20)
Spliceosome [BR:
esp03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
116692521 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-GeneID:
116692521
NCBI-ProteinID:
XP_032376771
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Position
7:7876114..7889834
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AA seq
786 aa
AA seq
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MDAFVKKAAHNIETRKRTDDVILSEGIDFSSLLLSQAVLDGLSSAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLVLENPATQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVSQDKTHLKKCHVAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPVNKQMLALSATYPEFLAQHLTRYMREPTFVRLNPSDMGLKG
LKQYYKLVQSDPLPHKVFEAKVEHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AACISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDADKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKIMAIAQKCSLRLSTLPSTIEPGLMDEQCDWDVCT
EASTPGPLPQLCSRTEKKKQPKLVPDQSLKHSSHRKLEKTHQTPRLGAHDEGNPRRASPA
KATLPPGPPLAVPTRKELQDALPKISPLSSFKNCRSRFLAFEEAERDYHSFITTGLGRSV
EVVREFRGGEDGDLNGHRESFTLNDDGGQSLKQDRERWKSNISPPRSVSGSSNSQSDEGD
EANQTRGHNYRAITKLETEARETPTLSKPKAATNRSSVCTSSAPKTYHQPARSSSARVLS
QPESNDSIPIVQSSRHPSQTAPAHTDKNESRKTVKQSKKISKMNREQKRERDEGEHDYYD
DDDDDHDEDEWTAETYWRASYRAWNDYYASMSPFQEQNYQSYYGVAQNWMAAYRMNAIYM
EELLKH
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggatgccttcgtgaagaaagcagcccacaatatagaaacgcgaaaacggaccgatgat
gtgatcctgtcggagggaatcgacttcagctccctgctgctgtcccaggccgtgctggac
ggactgtcctccgcaggcttccaaaaaccctccccgatccagcttaaggcgatcccgctg
ggccgctgcggactagatttgattgtacaggccaagtctggcacggggaagacatgcgtg
ttctgcaccattgccctagactctctggtcctggaaaatcctgcaactcaggttcttgtc
ctggctcctacacgtgagatagcggtgcagatccactcagtggtgatggccataggctgt
gccatggagggcctcgagtgccatgttttcattgggggcaggcctgtgagccaggacaaa
acccatctgaagaagtgccatgtagctgtgggctcacccggtcgtatcaagcagcttatt
gagctggggatgttatccaccgccagcatcagactgtttgttctggatgaggcggacaag
ctgctggaggaaggcagcttccaggaacagattaactggatcttttcctctctgcccgtg
aacaaacagatgctcgcactctcagccacctacccagagttccttgctcagcaccttacc
cgctacatgagagagcctacttttgtcagactcaatcccagtgacatgggccttaaaggc
ctgaagcagtattacaagctggtgcagtccgatcctttaccccacaaggttttcgaggca
aaggtggagcacttgctagagcttttcagtaaaatcccattcaaccaggcactagtgttc
tccaacctacacacaagggctcagcacctggcagacatcctgtcctccaaaggcctacct
gcagcttgcatttcaggtggtctgagtcaggaccagagactggaggccatgtcaaaactg
aagcagtaccagtgcagggtgctcatctccactgacctgacgtccagaggtatagatgca
gataaagtaaatttggtgataaacctcgacgtgccacaggactgggagacctatatgcac
cgcattggacgcgctggccgctttggcactcaggggctggcagtgacctactgttgccat
ggtgaggaggagaacaagataatggccatcgcccaaaagtgcagcctaagattgtctacc
ttgccatccaccatagagcctgggttgatggacgagcagtgtgactgggatgtctgcact
gaggcttccactccaggccccttaccccagctctgctccaggacagagaagaagaagcag
cccaagttggtcccagatcaatctctgaagcacagcagtcacaggaagctagagaagacc
catcaaactcccagactgggagcgcacgatgaaggcaatccaagaagagcttctcctgca
aaagccactctcccaccgggtcctccactggcggtgccaactcgaaaagagctgcaagac
gctctgcccaagatctctcctctcagctcgttcaagaattgtaggtcaaggtttttggcc
tttgaagaggctgagcgggactaccacagcttcattaccacagggttggggagatccgtg
gaagtggttagggagttcagaggtggggaggacggtgatctgaatgggcatagagagtct
ttcacacttaatgacgacggaggtcaaagtttaaaacaagacagagaacggtggaagtct
aacatttcacctccgaggtcagtttctggttcttcaaactcgcaatctgacgagggcgat
gaggcaaatcagaccagaggacataactacagagcaatcactaagcttgagactgaagct
agagaaacgcccactctgtccaaaccaaaagcagcgaccaatagatccagtgtttgtact
tcttctgcacccaaaacgtatcaccagccagcccgttcgtcaagtgcgagagttttgtct
cagcccgagagcaatgattccataccaatcgttcaatcgagccggcatcccagtcagacg
gctccagcacatactgacaaaaatgaatccagaaagactgtgaaacagagcaaaaagatt
tcaaagatgaaccgagagcaaaaaagggaaagggatgaaggagaacacgattattatgat
gatgatgatgatgaccatgatgaagacgagtggactgctgaaacttactggagagccagc
tacagagcctggaatgattactacgcctctatgtctccttttcaagagcaaaattaccaa
agctattacggtgtagcccaaaactggatggcagcttatcgtatgaatgccatctacatg
gaagaactcctgaaacactga
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