Etheostoma spectabile (orangethroat darter): 116692545
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Entry
116692545 CDS
T08457
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116692545 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116692545 (prpf6)
Spliceosome [BR:
esp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116692545 (prpf6)
Complex C
U5 SnRNP specific factors
116692545 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
TPR_16
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
TPR_1
FAT
TPR_9
ARM_TT21_C
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
116692545
NCBI-ProteinID:
XP_032376811
LinkDB
All DBs
Position
7:7039551..7056378
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AA seq
964 aa
AA seq
DB search
MAHAAGKQGPKIVSKSSAGGTGAAGAGGGPPIMPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQDDDDEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLSEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTTVDPL
QGLGGLNTPYPGSMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDL
NSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTE
MCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPGSVRIYIRAAELETDIRAKKRVLRKAL
ENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRVLNKAR
ENIPTDRHIWITAAKLEEANSNTQMVDKIIDRAITSLRANGVEINREQWIQDAEECDKAG
SVATCQAVIRAVIGIGIEEEDRKHTWMEDADSCVAHGALECARAIYAHALQVFPSKKSVW
LRAAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILALAFQA
NPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIDASQEL
CTEALKHYEDFPKLWMMRGQIEEQCENMDKAREAYNQGLKKCPHSGGLWLLLSRLEERVG
QLTRARAILEKARLKNPQGPDLWLESVRLEFRAGLKNIANTLMAKALQECPNSGILWAEA
VFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEPDLGDA
WALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILAEVASKI
KNTF
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacgctgcaggaaaacaaggacctaaaattgtctccaaatcatctgcgggaggc
accggggcggcgggggctggtggtgggcccccgataatgcccctcgcctctccgctcatg
gggaaaaagaagaagccgtttctggggatgcccgctccgctgggctacgtccccggtctg
ggtagaggtgcaactggtttcaccacccgatctgatattggtcctgctcgtgatgccaac
gatccagtggatgaccgacatgcacctccagggaagaggacagttggggatcaaatgaaa
aagaaccaggatgatgatgatgaagatctgaatgacacaaactacgatgagtttaatgga
tatgccggtagcttgttctcgagtggtccctatgagaaggatgatgaagaagcagatgcc
atttatgcagcactggacaagaggatggacgaaagacgcaaagaaagaagggagctgaga
gagaaggaagaaatcgagaaataccgtatggagcgacccaaaatccagcagcagttttca
gatctaaagaggaaattgtcagaggtgtcagaggaggagtggctgagcatccctgaggtg
ggagatgccaggaataagcgccagagaaatccccgctatgagaaactcacccctgttccc
gacagcttcttctccaaacacctgcagactggagagaaccacactactgttgaccctctg
caagggctgggaggtctgaacacaccttacccaggaagcatgacaccagggacaggagag
ctggatatgaggaaaatcggtcaggccaggaacacacttatggatatgagactcagccag
gtgtctgactcggtgagcggacagacagtggtggatcctaaaggttacctgacagatctc
aactccatgatccccacacatggaggagacatcagtgacatcaagaaagcccgtctactt
ctaaaatctgtgagggagaccaatccccatcacccgcctgcctggattgcttctgccagg
ctggaggaggtgactggaaaactgcaggtggcccggaacctgatcatgaaaggcacagag
atgtgtcctaagagtgaggatgtgtggctggaggcagccaggctccagcccggagacaca
gccaaagccgtggtagcccaagctgtccgccacctgcctgggtccgtccgcatctacatc
agagctgcagagctggagacagacatcagggccaagaaacgagtcctcaggaaggccctc
gagaatgtgtccaagtcagttcgactgtggaagacagctgttgagctggaggagccagag
gatgccaggatcatgcttagcagagctgtggagtgttgccctacaagtgtggagctgtgg
ttggcactagcccggttagagacatacgagaacgcacgtcgtgtactgaacaaagctcga
gagaacatccctactgatcgccacatctggatcactgctgctaagttggaggaggccaac
agcaacactcagatggtggacaagatcattgacagagccatcacgtcgctgcgcgccaac
ggcgtggagatcaacagagagcagtggatacaggatgcagaggagtgtgacaaggcaggc
agtgtagctacctgccaggccgtgataagggctgtcatagggattggtattgaggaggag
gaccgcaaacacacctggatggaggatgcagatagttgtgtggcccatggggctctggag
tgtgccagggccatctatgcccatgctctgcaggtgttccccagtaaaaaaagtgtctgg
cttagagctgcttactttgagaagaataacggcaccagggagtcattggaggccctgctc
caacgggccgtagctcactgtcccaaagcagaggtcctgtggctgatgggggccaagtcc
aagtggctggctgaggatgtgcctgcagccagaagtattcttgctctggccttccaggct
aacccgaacagtgaagagatctggctggctgctgtgaagttggagtctgagaataacgag
tatgaaagagcccgccgactgctggccaaggcccgcagcagtgccccaaccgccagggta
tttatgaagtcagtcaagttggagtgggtgttggggaacatagatgcttcccaggagttg
tgcaccgaggccctgaaacactacgaggacttccccaaactttggatgatgagaggccag
atagaagagcagtgtgaaaacatggataaggccagagaggcgtacaaccaagggttgaaa
aagtgtccccactcgggcggcctgtggttgctgctgtctcgtcttgaagagagagtggga
cagctgaccagagccagagcaatcctggaaaaggccagactcaagaatccccagggtccc
gacctatggttggaatcggtcagactggagttccgggctggactaaagaacatcgccaac
acactgatggccaaagccctgcaggaatgccccaattcaggtatcctgtgggctgaggca
gtgtttttggaggcaaggccccagaggaagactaagagtgtggatgctttgaagaagtgt
gaacatgatccccatgtcttgcttgctgtagccaagttgttctggagtgagcgaaagatc
accaaagccagagagtggtttctgaggacagtaaagattgagccagacctgggagatgct
tgggctctcttctacaagtttgagttgcagcatggcacagaggaacagcaagaagaggtg
cgaaagcgctgtgagaatgcggagccccgccatggagaactatggtgtgccgagtccaaa
cacgtcctgaactggcagaagaagacaggagagatcttagcagaggtagccagcaagatc
aagaacacgttctga
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