Etheostoma spectabile (orangethroat darter): 116692978
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Entry
116692978 CDS
T08457
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
esp04515
]
116692978 (clstn1)
Cell adhesion molecules [BR:
esp04515
]
Cadherins
Cadherin related
116692978 (clstn1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
FAM176
Laminin_G_2
Toxin_R_bind_N
Cadherin_C_2
V_ATPase_I
EphA2_TM
PFF1_TM
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
116692978
NCBI-ProteinID:
XP_032377525
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All DBs
Position
7:12635405..12681047
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AA seq
981 aa
AA seq
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MRFRGNTQFASAVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTLTKEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDINEYSPVFKEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICNYEIVTPDVPFTVDKDGFIKNTEKLSYGKEHMYKLTVTAYDCG
KNRASEDVLVKISVKPTCKPSWQGFNKRIEYEPGTGSLDLFPSMHLETCDEPITSIRANI
ELETNHIGKGCDRDTYSEKSLHKLCGASSGTVELLPTPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAIKVPDGMVSTSLKEPFTISVWMRHGPGAHEKETILCNSDKTEMNRHHYSLYVH
NCRLILLLRQDPSEAENYKPAEFHWKLDQACDKEWHHYVLNVEFPTVSLFVDGTTFEPFL
VTEDYPLHSSKIETQLTIGACWQDNSGHDNDTESVSEPTSGGNARMTQFFRGNLAGLMIR
SGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVEFNPNQSSLTVEGDDIDAFDKVMQHI
SYLNSRQFPTPGIRHLRISTTVKCFNEESCVTVPDAEGYVMVLQPEEPKISLSGIDHFAR
SAAEFESQEGVTLFPELRIVSTITREVEADTESEATEGADDDPTVQETVVSEEIMHNLDT
CEVTVVGDELDGEHEGLEVDMSKLQQHTLEMCSSNLGLVITGVNTMANYEQVLHLIRYKN
WHTEALFDRKFKLVCSELNGRYISNDFKVEVNVIHTANPVEHANNAMVQPNFINPVHHAS
VDLSGHNLVNAHQASVVPSAATIVIVVCVSFLVFMIILGVFRIRAAHQSTMSDQENGKEN
EMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEDGEEEDDITSAESESSEDEEGAEP
EDQQGASRQQQLEWDDSTLTY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcggttccgtgggaatacacaatttgcatccgctgtcggactggtcctcggactatta
tgtgcggtggaggcagctaaagtcaataagcacaaaccatggatcgagacgacgtaccac
gggatcgtaacggaaaacgatgacaaagtacttctggaccctcctctaattgcactggac
aaggatgctcctctacgctacgcagagagttttgaggtgaccctcactaaagaaggtgag
atttgcggcttcaggatccatgggcagaatgtccccttcgaggcagtggtcctggacaag
tccactggcgagggggttatccgggccaaggacaaactggactgcgagctgcagaaagag
cacaccttcaccatccaagcctatgactgtggagagggtcctgatggtgccaacatgaag
aaatcccacaaggccactgtccacatccaggtgaatgacatcaatgagtattcgccagtg
ttcaaggagaagtcctataaagccaccgttatcgagggaaagaagtatgacagcatcctg
aaggtggaagcagtggacgcagattgttctttccagtttagccaaatctgcaactacgag
attgtcacccctgatgtgcccttcaccgtcgacaaagatggattcatcaagaacacggag
aaactgagctacggcaaagagcacatgtacaagctgactgtgactgcctacgattgtgga
aagaaccgtgcttccgaggacgttctggtcaagatcagcgtcaagcccacctgcaaaccc
agctggcaaggtttcaataagaggattgaatacgagcctggcacaggtagcctggatctt
ttccccagcatgcacttggagacctgtgatgagccaatcacatctatccgagccaacatt
gaactggaaaccaaccatattgggaagggctgcgatcgtgatacctactctgagaagtca
ctgcacaagctgtgcggagccagctccggcaccgtggagcttctgcctacacccagcagc
tctgccaactggacggtagggctgcctaccgataacgggcacgacagtgaccaggtgttt
gagttcaatggcactcaggccatcaaggttcctgatggcatggtgagcaccagcctaaag
gagcccttcactatctctgtgtggatgagacatggccccggggcccatgagaaggagacc
atcctctgcaactctgacaagacagagatgaatagacaccactactcgctgtatgtccat
aactgcaggctgatcctcctcctccgtcaggatccatcagaggccgagaactacaaacca
gccgagtttcactggaaactcgaccaggcgtgtgacaaagagtggcatcactatgtgctg
aatgtggagttccccactgtgtctctgtttgtggatggaactacctttgagcccttcttg
gttacagaggactacccactgcactcctccaagattgaaactcagcttaccattggtgcc
tgctggcaagacaactcaggacatgacaatgacactgagtcagtctctgagcccacctca
ggtggaaatgctcgaatgacccagtttttccgagggaacctagcggggctgatgatccgc
tctggcaagctggagaacaagaaagtgattgactgtttgtacacctgcaaggaaggactg
gacgtgcagctgcctgaggaggtagcttcagctgtcaaggttgagttcaaccccaaccag
tcctctctgactgtggagggcgatgacattgatgcctttgacaaagtcatgcagcacatc
tcctacttgaactcccgccagttcccaacccctggcatcaggcaccttcgcatctctacc
acagtcaaatgcttcaacgaggagtcctgcgtaacagtgccagatgcggaaggttatgtg
atggtcctgcagcccgaagagcccaagatcagcctgagcggcatcgaccacttcgctcgc
agcgctgccgaatttgagagccaggaaggtgtgacgctgtttcccgagctacgcatcgtg
agcacaatcacccgcgaagtggaggccgacactgagtctgaagcaacagaaggagctgat
gatgaccctacggtccaagagacagtggtgtcagaagagatcatgcacaacctggacaca
tgtgaagtgactgtggtgggagacgagctggacggggagcacgagggcctggaggtggac
atgtccaagctgcagcagcataccctggagatgtgttcctctaacctgggcctcgtcatc
actggtgtgaacaccatggccaactatgagcaggtcctgcatcttatccgttacaagaac
tggcacaccgaggctctctttgacaggaaattcaaactggtctgctctgaactgaacggt
cgctacatcagcaatgacttcaaggtcgaggtgaatgtaatccacacagccaatcctgtg
gagcatgccaacaatgctatggtgcagcccaacttcattaaccctgtgcatcatgcctct
gtggatctgtccggtcacaacctggtcaacgctcaccaggcctcagttgttcccagcgct
gccaccattgtcattgtggtatgtgttagcttcctggtgtttatgatcatcctgggcgtt
ttccgcatccgagccgcacaccagagcaccatgagtgaccaggagaacggcaaggagaac
gagatggactgggacgactcagccctcaccatcaccgtcaaccccatggagacgtacgag
gaccagcacagcagcgaggaggaggaggaagaggaggaggagagcgaggatggagaggag
gaagatgacatcacaagtgctgagtcagagagcagtgaagacgaggagggcgcggagccg
gaggaccagcagggggccagcagacagcagcagctggagtgggacgactccaccctcacc
tactaa
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