Etheostoma spectabile (orangethroat darter): 116693340
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Entry
116693340 CDS
T08457
Symbol
rora
Name
(RefSeq) nuclear receptor ROR-alpha isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
esp03000
]
116693340 (rora)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
esp03310
]
116693340 (rora)
Transcription factors [BR:
esp03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
116693340 (rora)
Nuclear receptors [BR:
esp03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
116693340 (rora)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
116693340
NCBI-ProteinID:
XP_032378134
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Position
8:complement(7889224..8075250)
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AA seq
512 aa
AA seq
DB search
MDVQGCLCTPVLGDYLLKVIWDHSVPLIIPESIQHLHLFCCIHRSTSKTKAASAAQIEII
PCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNRCQHCRLQ
KCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTPSYGLSAN
GLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPICDFAPGS
GFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFLQEEVESY
QSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRA
FDTQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFSAFVLMSA
DRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRHTEKLTAF
KAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgcagggctgcctgtgtactccagtgctgggagactatttgctgaaggtcatt
tgggatcatagcgtgccattaataattcctgaaagcatccaacatctccatctgttctgc
tgcatccatcgctccacttcaaagacaaaggcagcatctgcagctcaaatcgaaataatt
ccctgcaagatctgtggagacaaatcatcaggcatccattatggcgtgataacatgtgaa
ggctgtaagggcttcttcaggaggagtcagcagagcaatgcagcctactcctgcccccgt
cagaagaactgcctgatcgaccgcaccagccgcaaccgctgccagcactgccggctgcag
aagtgcctggcagtgggcatgtcacgagatgcggtgaagtttggtcgcatgtcaaagaag
cagcgagacagcctgtatgctgaggtccagaagcatcggctgcagcagcagcagcgtgac
caccaacaacagcccggggaggcagagccgctcacacctagctatggcctctcagccaat
ggcctcacagagctccatgacgacctcagcggctacatggatggtcacacccctgatggc
agcaaaccagactcggcggttagcagcttctacctggacatccagccatctcctgaccag
tcaggcctggacatcaacggcataaagccggagcccatttgcgactttgcccccggctct
ggcttcttcccttactgctccttcaccaacggagaaacctcccccaccgtgtccatggct
gaactagagcacctggcccagaacatctccaagtcacacatggagacatgtcagtacctg
agggaggagctgcagcagatgacctggcaggccttcctgcaggaggaggtcgagagctac
cagagcaagccccgggaagtcatgtggcagctgtgtgctatcaaaataacagaggccatt
cagtatgtggtggagttcgccaagcgcatcgacggcttcatggagctgtgtcagaacgat
cagatagtgctgctgaaagcaggctctttggaagttgtgtttgtcagaatgtgccgtgcc
tttgacacgcaaaacaacacagtctattttgatggaaagtatgccggaccggatgtgttc
aagtcattaggctgtgacgacttgatcagctccgtcttcgagtttgggaaaaacttgtgt
tctatgcacctgtctgaggatgagatcgccctgttctccgcctttgtgttgatgtctgct
gaccggtcttggctccaggagaaggtgaaggttgagaaactccaacagaagatccaactg
gctctccagcacgtcctgcaaaagaaccacagagaggatgggatacttacaaagttgata
tgcaaagtgtcgacactgcgagcgctgtgcagtaggcatacagagaagcttacagctttc
aaagcaatatacccagacattgtgcgtgcccacttcccccccttatacaaggagctgttt
ggatcagactttgagcagtccatgcccgttgacgggtag
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