Etheostoma spectabile (orangethroat darter): 116693934
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Entry
116693934 CDS
T08457
Symbol
neo1
Name
(RefSeq) neogenin isoform X1
KO
K06766
neogenin
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04350
TGF-beta signaling pathway
esp04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
116693934 (neo1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
116693934 (neo1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
esp04515
]
116693934 (neo1)
Cell adhesion molecules [BR:
esp04515
]
Immunoglobulin superfamily
DCC/UNC5 family
116693934 (neo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
fn3_2
NDNF
fn3_SORL1
GH101_dom-5
Fn3_Dep-1_3rd
Sp38
EphA2_TM
PRIMA1
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
116693934
NCBI-ProteinID:
XP_032379160
LinkDB
All DBs
Position
1:19027281..19201967
Genome browser
AA seq
1505 aa
AA seq
DB search
MAERGALSLLSLLCLTFLSTETAAAKHVDKGSAAQPFSPFWFTAEPQDTLAIRGNSALLN
CSAHSDAATPARIEWKKDGTFMVSDERRNILPDGSLFFTHVVHSKHNKPDEGTYQCVATI
DNLGSISSQTARLSVAGMPRFASQPSPTTVHLGNNQVMACEVNSDLVPFTRWEKDRLPLE
LSTRLVQLPSGALAISNASEADAGLYRCLVENVGSSKYSDEAQLQVLPETGEESKLEFLV
QPVPVSKAVGASVLLPCLVTGYPVPHVRWMVGDKLLEESEGRVEVLGGGSVQISNLTEED
AGIYTCMAENTNGTIEAQAQLTIQVPPQFVKRPDNIYAYESMDIVFECEVSGSPAPTVKW
VKNGDAVIPSDYFKIIKEHNLQVLGLVKSDEGFYQCLAENDAGNIQSSAQLIILDHDVAL
PSFPPPSLTPNTTDHVTPGSRGVASPAGPTPSAPRDVVASLVSTRFIKLTWRPPAEPHGD
DITYSVFYSQDGTSRERVVNTSRPGEMQVTIQNLMPDTKYRFRVVAHNSNGQGESSAALK
VATQAEVQVPGPAPNLQAVSNTPTSVSLSWDKPLTGNGDMLTYKLYYTDKSFGNEQDVDV
DTQSYTMTGLKKNTEYSFRVVANNKHGPGVSTDDVVVRTLSDVPSAPPQNLTLEVQNSKG
IMLRWQPPPLNGQNGEITGYKIRYRKGSRRSEAAETTGGTQLYKLIDGLERGTEYSFRVS
AMTVNGTGPATEWTTAETFESDLDESRVPDQPSSLHVRPLVNSIVVSWTPPENQDIVVRG
YTISYGIGSPHAKTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPVYESAITRPQ
SDPIDPDVDLYELFHAPYTPVPDPSPMMPPVGVQASVLSHDTIKVTWADNSLPKNQKITD
NRFYTVRWKTNIPANTKVKMANTTSLSHVVTGLKPNTLYEFSVMVTKGRRTSTWSMTAQG
TTFETIPSSSPKDVTVVSKENKPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEVHDWVI
EPVVGNRLTHQIQDLTLDTTYYFKIQARNSKGMGPMSEAVHFRTPKTESSDKMANDQASN
VPPKPGPPLHPNEPGPVGKSGVGGHSEGHILVIVIIISVGAFTIIVVVVGAFLCTRRTTS
HQKKKRAASKSSNGSHKYKGNSKDLKPPDLWIHHERLELKPMDKSPDPNPVMTETPIPRT
SQDITPADSSLDNNPHLQQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDAQPPQPVIS
AHPIHSLDNHHHHYHMGSLASPTRSYLYHQGSGHTRPHACATPISHLDRVDSTESVRNTP
SSEPLPSAAASSQASCPSEILADPEGSYHGSTTTEEEPSYSSNLPPHRSAHPHAHAHPLK
SFGVPAIPATPPPTYESPALSSTPLLTQTGPPTHPHVVKTACIGTLGRTRTPMVVTVPNA
PDVPETSKMLEDVDSVLASLAPCPSPAPRSNPVPLPQSYEPDELTEEMAHLEGLMKDLNA
ITTAP
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcggggagctctgtcgctcctctctctcctctgtctcacctttctgtccacg
gagaccgccgcggcaaagcatgtcgacaaaggttcagcagcgcagcccttcagccccttc
tggttcactgcggagccccaggacactctggccattcggggcaactctgcactgctcaac
tgctcggcccacagcgacgcagctacgccggcccgcatagagtggaagaaagatggcacc
ttcatggtttcagatgagagacggaacatacttcctgatggctcgctgttcttcacccac
gtggtccactctaagcacaataagcctgacgagggcacctatcagtgcgttgccactatc
gacaacctaggatccatttccagccagacggcccgtctctcagtagcaggaatgcccagg
ttcgccagccagccctcgccgaccaccgtgcatctagggaacaaccaagtgatggcatgc
gaggtcaactcggatctggtgcccttcaccaggtgggagaaagaccgcctgccgctggag
cttagcaccagactggtccagctgcccagcggagccctggcgatcagcaacgcctcggag
gcagacgccggcctttaccgctgtctggtggaaaatgtggggtcgtccaagtacagcgac
gaggcccagctccaagtactgccagaaactggagaagagagtaagctggagttcttggtg
cagcctgtgcctgtgagcaaggcggtgggcgcaagcgtgctgctgccctgcctggtcact
gggtaccctgtgccacacgttcgttggatggttggagacaagcttctggaagaaagtgag
ggacgtgtggaggtgcttggaggaggcagcgtccagatatctaatctcacagaggaggat
gccggcatctacacctgcatggcggaaaataccaatggaaccattgaagcccaggcccaa
ctcaccatacaagttcctccccagtttgtcaagcggccagacaacatttatgcctatgag
tccatggacatcgtctttgagtgtgaagtttctggctcaccggctcccactgtcaaatgg
gtcaagaacggagatgctgtcatccccagtgactacttcaaaataattaaggagcacaac
ctgcaggttctgggcctggtcaagtcagatgagggtttctatcagtgcctggcagaaaat
gatgcaggcaacatccagtccagcgcccaactcatcatcttagatcacgatgtagccctg
ccctctttccctcccccctcactgactcctaacactactgaccatgtaacgccaggctcc
agaggtgtagccagtccagcagggcccaccccctccgctccacgggacgtggtagcttcg
ttggtttccacccgcttcatcaagctgacctggcgcccgccagccgaaccccatggagac
gacataacctactctgttttctacagccaggatggcactagcagggagcgagtagtgaat
accagccgtccaggggagatgcaggtcaccatccagaacctcatgccagacaccaaatat
cgcttcagggttgtggcccacaacagcaacggccagggagagagctctgcagcgctcaaa
gtggccacccaggctgaagtccaagtgcccggccctgctcctaacctgcaggcggtgtcg
aacacgccgacctctgtctctctcagctgggacaaacccctcactggcaatggagacatg
ctcacctacaagttgtactacacagacaaaagctttggcaacgaacaggacgttgacgta
gatactcagtcctacaccatgactgggctgaagaagaacacggagtacagtttccgtgtg
gtggccaataacaagcacggcccaggcgtctccaccgacgacgtcgtcgttcgcacattg
tctgacgtaccaagtgctcctcctcaaaacctcactctggaggttcagaactcaaagggc
atcatgcttcggtggcagcccccgccccttaacggccagaatggggagatcaccggctac
aagatccgataccggaaaggatcccggaggagtgaagcagccgagaccaccggaggcacc
cagctttacaagctcatcgacggtctagagcgtgggacagaatactccttccgggtttcg
gccatgactgtgaacggcacgggacctgccacagagtggaccacagcggagacgtttgag
agcgacctggatgaatcccgtgtgccagaccagcccagctctctccatgtccggccgctg
gtcaacagcatcgtggttagctggacgccgccagagaaccaggacattgtggtgcgcggt
tacaccatcagctatggcatcggcagtccccatgctaagaccatcaaagtggactacaag
cagcgctactacactatagagaacctcgaccccagctcccactatgtgatcacactgaag
gccttcaataacgtgggtgaggggattcctgtgtatgagagcgccataaccagaccacag
tcagaccccatagaccccgatgttgacctgtacgaactcttccatgctccatacacccca
gtaccagacccctctcccatgatgccacccgtgggtgttcaggcctccgtgctgagccac
gacaccatcaaggtgacctgggctgacaactcgctgcccaagaaccaaaagatcacagat
aaccgcttctacacagtgcgctggaagaccaacatccccgccaacactaaagtaaagatg
gctaacaccactagcctgagccacgtggtgacgggtctgaagcccaacacgctgtacgag
ttctccgtcatggtcaccaaagggcgccgcaccagcacatggagcatgactgcacagggc
accacatttgagaccattcccagctcctccccgaaagacgtgaccgtggtgagcaaagag
aacaaacctcgcaccataattgtcaactggcagcctccctctgaggccaatggaaagatc
actggctatatcatctactacagtacagatgtgaacgctgaggtccatgactgggttatt
gaaccagtggtgggcaaccgcctgacccaccagatccaggatctgacgctggacaccacc
tactacttcaagatccaggcccgtaactcaaagggcatgggccccatgtctgaggccgtc
catttccgcactccaaagactgagtcctctgacaaaatggctaatgaccaagcctcaaat
gttccaccgaagccggggcctccattacacccaaacgaacctgggcctgttggtaaatca
ggggttggaggccacagtgaaggtcacatcctggtcattgtcatcatcatctcagtggga
gccttcaccatcatcgtagtggtggtgggggccttcctgtgcacacggcgaaccacgtcc
caccagaaaaaaaagcgggctgcctcaaagtcctcaaacggctctcacaaatacaagggg
aactccaaagacctgaagccacctgatctttggatccaccatgagagactggaacttaaa
cccatggataagtcgccagatcccaacccagtcatgacagaaacgcccatcccccgcacc
tcgcaggacatcacgccggctgatagcagcctggataacaacccccacctgcagcagcgg
cgcaactcctaccgtggccatgaatcagaggacagcatgtctacactagcaggccgacga
gggatgaggcctaaaatgatgatgccttttgatgcacagccgcctcagcccgtgattagt
gctcaccccatccattcccttgataaccatcaccaccattatcacatgggaagcctggca
tcgccaacacgcagctacctctaccaccagggcagcgggcacacgcgcccgcacgcctgt
gccacccccatctcccatctagacagggtggactctacagagtcggtaaggaataccccc
agttcagagcccctcccttcagccgccgcctcttcccaggcctcctgcccctcggagatc
ctggccgaccctgagggcagctaccacggctccaccaccacagaggaggagcccagctac
tccagtaacctgcccccccaccgctcggcccacccgcatgcccacgcccacccactcaag
agctttggcgtacctgccatcccagccaccccccctccaacatatgagtcgcctgccctg
tccagcactcccctgctcactcagaccgggcctcctactcacccccatgttgttaaaaca
gcctgtatcgggacactaggaaggacacgaacaccaatggtcgtcactgtgcccaacgcc
ccggatgtgccagagaccagcaagatgctggaagatgtagacagcgtgcttgcttccctc
gccccctgcccctcccccgccccccgcagtaaccctgttcctctccctcagagctacgag
cccgacgagctgaccgaggagatggcccacctcgagggcctcatgaaggacctgaacgcc
atcaccacagcgccatga
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