Etheostoma spectabile (orangethroat darter): 116694003
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Entry
116694003 CDS
T08457
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116694003 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
esp04121
]
116694003 (herc4)
Enzymes [BR:
esp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
116694003 (herc4)
Ubiquitin system [BR:
esp04121
]
Ubiquitin ligases (E3)
HECT type E3
116694003 (herc4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
116694003
NCBI-ProteinID:
XP_032379284
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Position
8:complement(28508..74444)
Genome browser
AA seq
1060 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRKCDFFHGKQVCDVGCGHRHTAFLLEDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQIILAVCCGEAHTLALNDKGLVFSWGQGSDGQLGLNN
FEDCVRVPRNIKSLSDVHIAQVACGYWHSHALSRGGQVFSWGQNRYGQLGLGINGQSIST
PQIIQSLQGIPFAQISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDSNDRSFPALLKSLR
SQRVIYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSANHEINPRKVFELMGNVVTQIA
CGRQHTIAFTPSREKMDSFGLGGNGQLGTRSTCNRKSPAPVKGPWVSCNSPTDTEFIYFL
PSLHNIADSEGGIFVKRIYAGGDQSFAHYCTANKLQDINDVRIQDPYRKICTLNEDIIHK
WCNHSPGRLPQEISNEIDLVFSSASCLNGSFLSMSHPDHYSTSSKCSGVDMNQARLLFHR
VVQEDHPEVAQQIAASLEKNLIPRLSNSPPDIEALRLYLTLPECPLFSDRNNYVTIAIPF
AKSILSLKEAPLKVLGNWWSTFEPQVFQRLVELYKGVVVYLLQMHKMGIPSVEQRIFTCF
LDTSLRLLEILHMVSERAGHIIQYDKFYIHELDDLIDIRNDYITWIQRQMYPMGHDGVVT
LCRYPFVFDAQAKTTLLHTDAVIQMQMAVDQAQMQNFSSMFMPAVESVNPCLILIVQREN
IVGDTMEVLRKSKNVDYKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYYE
ESRLIWFSNKTFEDIDLFNLIGIICGLAIYNLTIVELNFPVALYKKLLKRKPTLEDLKEL
MPDVGRSLQQLLDYTEDDLEETFCLNFTITEENYGATEVLELVPNGEDINVNQSNRQDFV
NAYVDYVFNTSVAPLFECFFAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWTELEKSTE
YKGEYWADHPTIRLFWEVFHNLPLEKKKEFLLFLTGSDRIPILGMKSLKLVIQPTGGGEH
YLPVAHTCFNLLDLPKYRSLETLREKLLQAIDHNQGFNLA
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggtaatgcttcctacggacagttaggcttgggtgggattgatgaagag
attgtggttgagccgcgaaaatgtgatttctttcacgggaagcaagtgtgcgatgtgggg
tgtggccacagacacacagccttcctgctggaggacgggacagtatacacctgtggctgc
aatgacctggggcagctgggacacgagaagtccagaaagaaaccagaacaggttgtggcc
ctggatgcacagatcatactggcagtgtgttgtggagaggcccatacgctcgccctgaat
gacaaagggctggttttctcatggggccagggctcagatggccagttgggccttaataac
tttgaagattgtgttcgtgtgcctagaaacatcaagagtttgtcggatgtacacattgct
caggtagcctgtgggtattggcactcccatgcactttcaagagggggccaagtcttctcg
tggggccagaatcgatatggacaacttgggctaggaataaacggacagagcatttccacg
ccgcaaatcattcagtctctgcagggcattcctttcgcccagatatcagcaggtggcgct
cacagctttgccctcactctctcaggagccgtgtttggttgggggcgcaacaagtttggt
cagctgggtctcaatgacagcaatgatcggtctttccctgccctgctgaagtctctcaga
tctcagagagtgatttacatctcctgtggagaggatcacacagcagcactgaccaaggaa
ggaggtgtgtttacatttggagcgggaggatacggacaacttggacataactctgcaaac
catgaaatcaaccctaggaaagtgtttgagctcatgggaaacgtagtcacacagattgct
tgcggaaggcagcacacgattgccttcacaccctcccgtgagaagatggactcatttggg
ctcggtggtaacggacagcttggaactcgctccacttgcaacagaaaaagccccgccccc
gtcaaaggcccctgggtttcctgcaattctccaacagatacagaatttatttatttcttg
ccatcattgcataacattgcagactcggaggggggcatttttgtcaagaggatttatgcc
ggaggagaccaaagctttgctcactattgcactgccaataaactccaggacataaatgac
gtgaggatacaagatccctacagaaagatctgcaccttgaatgaggatattatacacaag
tggtgcaaccactcaccaggaagactgccacaagaaatctccaatgagattgacctcgtg
ttctcctcagcaagctgcctcaacggatcctttctgtcaatgagtcatccagatcactac
agtaccagcagtaaatgttcaggggtggatatgaaccaggcacgcctcctgtttcacaga
gtggtccaagaagatcaccctgaggtcgctcagcagattgctgccagtctggagaagaac
ctaattcccagactaagcaactctcctccagacattgaagccctgagactctacctcact
ctcccagaatgccctctcttcagtgaccgaaataattacgtgaccatcgctatcccgttt
gccaaatcaatcctcagtctgaaagaggctccattgaaggtgttaggaaactggtggtct
acgtttgagccccaagtcttccagcggctggttgagttgtacaagggcgtggtggtgtat
ctgcttcagatgcacaagatgggcattccttcggtagagcagagaattttcacctgtttc
ctagacacgtctctccgactcctggagatcctgcacatggtgagtgagagagcaggacac
atcattcagtacgataaattctacatccatgagttggatgacctgatagacatcagaaat
gactacatcacatggatccagaggcagatgtacccaatgggtcatgatggtgtggtgact
ctgtgcaggtatccctttgtgtttgacgcccaagcgaagaccacactgcttcatactgat
gctgtcatacagatgcagatggcagtggaccaggcacagatgcagaacttcagctccatg
ttcatgccagcagtggaatctgtcaacccgtgcctcatcctcatcgtccagagggaaaac
attgttggagacaccatggaagtcctcaggaagtccaagaacgttgactacaagaaacca
ctcaaggtgatcttcgtgggagaagaggccgttgatgcaggaggcgtgagaaaggagttc
ttcctcctaatcatgaaagagctgctggatccaaaatatgggatgttccgttactacgag
gagtccaggctcatctggttttcaaacaagacttttgaagacatcgacttgtttaacctg
atcgggatcatctgtggcctggccatctacaatctcactatagtggagctcaacttccct
gtggccctctacaagaagctcctgaagaggaagccaacgctagaggacctgaaggagcta
atgccagatgtgggaaggagtctgcagcagttactggactacacagaagatgacttggag
gaaaccttctgcttgaacttcacaatcacggaggaaaactatggtgccacagaggtcttg
gaactagtaccgaatggcgaagacatcaatgtcaatcaatcaaacaggcaagacttcgtc
aatgcatatgtggactacgttttcaacacgtcagtggccccgctgtttgagtgcttcttc
gcaggcttccacaaagtttgcggtgggaaagttctagagctgttccagccaaatgaactg
caagccatggtcattggcaacaccaactatgactggacagagcttgaaaagagcactgaa
tacaaaggggagtactgggcggaccatcccaccatcaggctcttctgggaggtcttccac
aatcttcctttagagaagaaaaaagagtttctcttgttcctcacaggaagtgaccgcata
cccattttgggcatgaaaagcctgaagctggtgatccagccgaccggtggaggggagcat
tacttacctgtggcccacacctgcttcaacctgctggacctacccaagtacaggagtctg
gaaacactccgcgagaagcttctacaggctatagatcacaatcaaggctttaatctggcc
tga
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