Etheostoma spectabile (orangethroat darter): 116694325
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Entry
116694325 CDS
T08457
Name
(RefSeq) aggrecan core protein-like
KO
K06792
aggrecan 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
esp00535
]
116694325
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116694325
04091 Lectins [BR:
esp04091
]
116694325
Proteoglycans [BR:
esp00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
116694325
Glycosaminoglycan binding proteins [BR:
esp00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
116694325
Lectins [BR:
esp04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
116694325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
I-set
PGDH_inter
Motif
Other DBs
NCBI-GeneID:
116694325
NCBI-ProteinID:
XP_032379898
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All DBs
Position
8:14411987..14428731
Genome browser
AA seq
1346 aa
AA seq
DB search
MTPLLLLCVSLPFISATVLFELTNHDDGDGTLRVSIPMEMPLRPLLGSKVVVPCYFQDNT
VNDTVAPTVAPLSHRIKWTYVTKEKVTTILVASEGKVQVETEYLDRVTMINYPLVPTDAT
IEITELRSKDSGTYRCEVMHGVEDNYDSVDIQVQGVVFHYRAISTRYTLTFEKAKAACIQ
NSATIATPAQLQAAYDDGYHQCDAGWLSDQTVRYPIHEPRERCFGDKEDFPGVRTYGVRD
VNETYDVYCFAEKLSGRVFYSMSVEKFTFYEAGDQCAKLGARLATTGELYLAWKAGMDVC
NAGWLADRSVRYPINIARPQCGGGLLGVRTVYLFPNQTGYPYPDSHYDAVCFQAGEDDNA
VPVRTTPFPDIIHITPAPGIHPSFTPSPGGEEIKRGEVLSLLPVPPSMTDLDSAMSPTGV
VFHYRPITGRYTLNFVEAQQACQSVGAVIASPQQLQGAFEKGLHQCDAGWLRDQTVRYPI
VLPRDNCAGNLPHLPGVRTYGLRPAGEHYDVFCYVERLRGEVFFTSDYDSFSFEEAVQHC
QKLNTTLATTGQLFAAWNQGLDKCRPGWLMDRSVRYPITTPRSQCGGGQVGVHMIYAYPN
QTGFPDEHSRYDAYCFKAEIPIVDVEHETSVNLTIVTVDVINETTVKVDHFAPTVETTVH
DNGTETSVNITEIEDFINKTTITTHQVDNAVRPLLPPVPVDVSGSGSAVDVSGSGSAVDV
SGSGSAVDVSGSGSADHSASGEISGESGTSGTSVDASGSGQNVIFSGCTDVFSGDHSASG
GLQEAEGGSAVIITSGELGSASGSGSGSGDDGQHSGFSVSGSGFTSGSGDISGSSGDLII
MVDGKMEEVSKTYPKPTEQELGQGGIDTSGAFLESSASGSGSTSGSGSDGFSGISFVDHS
TVDLTVQPSGEQEVSGYRPSGYGFHSGFPSGFPSGVSSSGSASGDYILHRGDVIYLTGND
MIEVTELPQVRHPEQGRGVVEVSGEGSGSGNHHEFSATSDQGLHLSGRGALHEKTFGESL
SITLPPGMTHTENIASPSKSGLVDEGQETHAEPTIYAVTPDAAYTSPTTAPSLSLATPAV
MKQPKVVEASADPCDPNPCGSGSCSVQGELAVCQCPTGFTGEDCSTPVQGCAEGWLEFKG
SCYLHFAERNTWPEAEQRCQEVNAHLVSIGSQEEQQFVNSNGQDYQWIGLNDKDVQNEFR
WTDGSPLTFENWRPNQPDNYFNSQEDCVVMIWHEGGQWNDVPCNYHLPFTCKTGPATCGA
PPEVEHGRPMGSGRERYPVNSIVRYQCDAGYTQRHLPVIRCMPDGQWEKPQVECTEAGAN
SNRLHKRSLRRRSKGVSSQQEQRKLL
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgacccccctgcttctgctttgtgtgtccttgcccttcatctcggcaacagtattgttt
gagcttacaaaccatgatgacggggatggcacattgcgtgtcagcatccctatggagatg
cctctccgtcctctgctgggcagcaaggtagtagtaccatgttacttccaggacaacaca
gtcaatgataccgtcgccccgaccgtcgccccgctctcccaccgcatcaaatggacctac
gtcaccaaggagaaagtcaccacgatcctggtggcgtcagagggaaaagttcaagtggag
acagagtatttggacagagtgacgatgatcaactacccgctggtgcccactgacgcaacc
atcgagataacagagctgaggtccaaagattctggcacctaccgctgcgaggtgatgcac
ggcgttgaggacaactatgactctgtggacatccaggttcagggtgttgtgttccactac
cgagccatctccacccgctacaccctgacgtttgagaaggcaaaggccgcctgcatccaa
aacagtgccaccattgcaactccagcccagctgcaggctgcttacgatgacggataccac
cagtgtgatgctggatggctctcggatcagactgtcaggtaccccatccatgagccgagg
gagcgttgctttggagacaaggaggacttccccggcgtgagaacctatggcgtgagagat
gtcaatgagacctacgacgtgtactgttttgcagagaagctgtcaggcagggtcttctac
tccatgtctgtagagaagtttaccttctatgaagcaggagatcagtgtgccaaactcggt
gcccgactcgccaccaccggagagctatacctggcctggaaggctggcatggatgtgtgt
aatgctggctggctggcggacaggagcgtgcgctaccccatcaacatcgccaggcctcag
tgtggaggggggcttctaggagtaagaactgtctacttgttccccaatcagaccggatac
ccctacccagactctcactacgatgctgtctgcttccaagctggtgaggatgacaatgcc
gttcccgtgagaaccactccttttccagatataatccacattacacccgcccctgggata
cacccaagcttcaccccctcacctgggggagaggagatcaagcgtggagaagtcttgtcc
ctactgcccgtcccgcccagtatgacagacttagattctgccatgtctcccacaggtgtg
gtgtttcactaccgacccatcaccggtcggtacactctgaactttgtggaggctcagcag
gcgtgccagagtgtcggggcggtcatagccagcccccagcagctgcaaggagccttcgag
aaaggcctgcaccaatgtgacgctggctggctccgcgaccagactgtcaggtatcccatt
gtgttacctagagataactgtgctggtaatctgccacacctcccaggagtcagaacctac
ggtctgagaccagctggtgaacattacgatgttttttgttatgtggaacgtctgcgaggt
gaggtcttcttcactagtgactatgacagcttctcctttgaggaggctgtgcagcattgt
cagaaactcaacaccaccttggcaaccactgggcagctgttcgctgcttggaaccaaggg
cttgataagtgccgtccaggctggctgatggaccgtagcgtccgctaccccatcacaact
cccaggtcacagtgtggaggcggtcaggttggcgttcacatgatctatgcctaccccaac
cagacaggatttcctgatgagcattcacgttatgatgcttactgttttaaagctgaaatt
cccattgtcgatgttgaacatgaaaccagtgtgaatctgacaattgtgacggtggatgtt
atcaacgaaacaacagtcaaagttgatcactttgctcctacagttgaaactactgtgcac
gacaatggaactgaaaccagtgtgaatattactgaaatagaggattttatcaacaagaca
accatcacaactcatcaagttgataacgctgtgagaccccttttacctccagtccctgtt
gatgtgtctggctccggttcagctgttgatgtgtctggctctggttcagctgttgatgtg
tctggctctggttcagctgttgatgtgtctggctctggttcagctgatcattcagccagt
ggggagatctcaggggagtctggcacctccgggactagtgttgatgcctccggttcagga
cagaacgtcatcttcagcggatgcactgacgtcttctccggagatcactctgcctctgga
ggtctgcaggaggcggaagggggaagtgctgtcatcatcacatccggagaactgggtagt
gcatctggatctggatctggatctggggacgacggacaacactctggcttcagtgtatcg
ggatcaggttttactagtggaagtggggacatcagtggtagcagtggtgacttaatcatc
atggtagatgggaagatggaggaggtgtcaaaaacttacccaaaacccactgagcaggag
ttaggccagggaggcattgataccagtggggcatttttagaatcaagtgcgtccggatct
ggaagtacgtccgggtcaggctcggatggattttctggcatctcatttgtcgaccacagt
accgttgatctgacagtccagccatccggtgagcaggaggtgtctggatatcgcccctct
ggatatgggttccacagcggctttcccagtggttttccatctggtgtctcaagcagcggc
tctgcctctggggactatatcctgcatcgtggtgatgtcatttacctaacaggcaatgac
atgatagaagtgaccgaactgccacaggtacgccaccctgagcagggacggggggtggta
gaggtaagcggggaaggaagtgggtcagggaaccatcatgaatttagtgccacttcggac
caaggcttgcatctctcaggacgtggagcccttcatgaaaaaacatttggagagagcctt
tctattaccctaccgcctggaatgactcacactgagaacattgccagtcccagtaaatca
ggacttgtggatgagggtcaggaaacccatgcagaacctacaatttatgcagtgactcca
gatgcagcctacaccagcccaaccacagcaccgtcgttgtcattagcaacccctgctgta
atgaagcaacctaaagtagtggaagcctctgcagacccctgtgatccaaacccctgtggt
tcaggatcctgctctgtgcagggagagctcgctgtgtgtcagtgtcctactggtttcact
ggtgaagactgctcgacacctgtgcaaggttgtgcagagggttggttggagttcaaggga
agctgttacctccactttgcggagagaaacacctggcctgaggcggagcaacgctgtcag
gaggtcaacgcccacctggtcagcattggctcccaagaggagcagcagtttgtcaattcc
aatggccaggactaccagtggattggacttaatgacaaagatgtgcagaatgagttccgc
tggacagacggcagtcctctgacctttgagaactggaggcccaaccagccagataactac
ttcaactctcaggaggattgtgtggtgatgatctggcacgagggcggacagtggaatgac
gtaccctgcaactaccatcttcccttcacctgcaagactggacctgctacgtgcggagct
cctcctgaggtggaacacggtcggccaatgggcagcggcagagagcgctaccccgtcaac
tccatagtccgctaccagtgtgatgcaggctacacacagcgccacctgcccgtcatacgc
tgtatgccagacggacagtgggagaagccacaagtggaatgtacagaagctggtgccaac
agcaacaggctacacaaaagatctctcagaagaagaagtaaaggggtcagcagccaacag
gaacagaggaagctgctctga
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