Etheostoma spectabile (orangethroat darter): 116694402
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Entry
116694402 CDS
T08457
Symbol
nlrc5
Name
(RefSeq) protein NLRC5 isoform X1
KO
K22615
NLR family CARD domain containing 5
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
esp04054
]
116694402 (nlrc5)
Pattern recognition receptors [BR:
esp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
116694402 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_NXF1-5
LRR_8
Atypical_Card
NOD2_WH
AAA_30
ABC_tran
AAA_25
Motif
Other DBs
NCBI-GeneID:
116694402
NCBI-ProteinID:
XP_032380021
LinkDB
All DBs
Position
8:complement(23330083..23381884)
Genome browser
AA seq
1886 aa
AA seq
DB search
MDEEAEPDNLNVNSILAQEFSEMLQVLSSQSPAILTKLCQIMPSDARRNINMDPSSCSPA
AVTEHIKAMLEYLRVANHADCCNFLQSMCILCEGIPMRLETRLMSVAGYANNVSENSSPC
GTDGKSSSPPSEQQLIKRPRIDHWENYIAAVMRLLQRRWERLSERLVREVQPENVWVRLR
TANRGRDRPDQTPGSSDKGGRTPEPDGDYGYMDSKVTLETFLQGCAGKVTVLVGQAGSGK
TLLMSCLGQQWAHGPGPIPSSYLFVLQEFRQLNILSHPLSLSELLFRHYLPLEGGNDEKS
AIVDYLLSNPEQSCWVLDGYEEFSSKLTRQEVQTELMDPEQPLPVADLISGLLNRRLLPG
CTVVVTCRARDVMDFEGISDKVGQLQGWEYHEIKEYVDNFFQIKGHSATKAIGVQATDLL
LSSRHLLAMSSLPALCNICCICLEHLLLKGEDQRGTQIPEETGSGRRRKAREKQEKGVQI
AEGGRGEEGSIGESYAQSRDQGGGRTWGEDTMMDGTNGRGQIPSTLTQVYLTILGAFLNR
DPNTRGCPDEPKTTPQSFVCELSQLAWKGLEESKILFMEEDISQDVLEFSVRTGLLAQVE
LRREDGILVNFYRFIHLTIQEFLAALRIMTSTDVSDMQLKKRFSLRTRWTTKSDQRTVFT
DSLHLYVCGLASPHCTAALVQLARTSGGTGGQSWVQKRQTLVLKLLKNLCHSNTLTGPKI
LDLCHCVQESQDNQLAKQVVGTRPTLELRNITLLPNDIDALAFVVNSVGDNGIGLDFRAC
SMELECLDVLPSCQFIHYLSFRSRKYGDKFAKKLSSILPKFTTLKKLEFCGASLTTTGAA
SLASTLQNCPNITEINLSDNNLKDGGIKHIADIFTKPSRLVLVRLGRNNSSLEAVDYLIG
KMSSCFNIQHLNADGKKELTVTFFQNSDLNRHITKSEPTISLLNQTWSKPKMQKVAKSLA
RCPALSVLDMSGGHLDVETLRTLTDFLPKFNVTKKIIVNDSLSSVESLMILTALLYKCPA
VVELHIRLQSPFQVSILFPGGKEKPANETSKVLCLSCCCLLPTHLDRVWRSLGASSDLTL
LDLSNNSLGNKGLKKVLDILPRLSNIQEVNVSNNGIGMEGVVMLAGALSSHDNLTQIHIS
HGDRDQVILKFGPDKRDDKMQLKMFRINNSSLMPSDTNRICGRLVLCRSHFELDLSHSSL
PDKAIESLVKILPKMASLQRLNVSHSITSTAGALMLVRCLTVSQRVTSVEIAPQIESFIH
FASVKTEQASCRLTRCNLNGEHLERLLEILQQGPHLSDLDLSSNRLEDEGVKCFLDSLQK
LKITSYVNLSNNGLSQQGLLDVASTLCMCNSVSGVEVSLGAEEKCLVWFTQCEGCVKTLS
VRESSLERDYLVRLAEIVSTCPSLTKLEFKNNLLQSDCIEDFVKLLNSSQRGFSVSIEER
WIRSEEAVSLVCRCLGLSSNIHTIRVHNNTLHLSLMKSTEITSVSLVDCAVEGYQLASMT
SIISRCPSLTELDFSHNSLGVEGAEFLCSVLPSLPNLTCLSIGSKEACVTVVEKLSEALL
QVAGIKCLNLSGHVISDTAAQTMTQMCPRLKSLNLSHCRWSAAAGLQLVTALQLCVSLEG
LCLDSLQLNAESSVCLGQALRNINSIRSLKLNKIDTVMGPSKANGLLDLLAAMEGLTRME
DIELDSWRMADRGIEQLTRLLPMWTELRKISLSKNLISDQSGEKLLEALKSCSHLEELHL
SSNSLGDLTAARMAQVLPSLTHITVLDISENRIGHEGSVSLSKAITCMKNLTKIHLTSIG
TSELCAVAASLAHCPLIQDVGLGWNNCGDEVAVELARVIPLCQKLNRIDRESLTGVFLEG
KGPWLEPYARSGSAAFQAVEKQSLPQ
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggaggctgaacctgacaaccttaatgtgaactccatcttggctcaggaattc
tcagaaatgctccaagtcctaagcagtcagtcacccgcgatcctaacaaagttgtgccaa
ataatgcccagtgatgctcgtcggaacatcaacatggaccccagtagctgttctccagca
gcagtaaccgaacatatcaaagccatgttggagtacttgagggtggccaaccatgcagat
tgctgcaacttccttcagagcatgtgtatcttatgtgagggcatccccatgcgcctggag
acgaggcttatgtcagtggctggatatgcaaataatgtttccgaaaattccagtccctgt
ggaacggatgggaagtcgtcatcgccgccttcagagcagcagctcatcaaacggccacgg
attgatcactgggagaactacattgctgcagttatgcgtttactgcagagaaggtgggag
cgactcagtgagcgcctggtgagggaggtccagcctgagaatgtgtgggtcagactaaga
acagcgaacagaggcagggacagacctgatcaaacccctggatcgtcagacaaagggggc
agaacaccagagcctgatggggattatgggtacatggattccaaagtaacattggagacc
ttcctccagggatgtgctgggaaggtgacagttctcgttggccaggctggatctggaaaa
actctgctgatgtcttgtttaggacagcagtgggcacatggaccagggcctatcccttca
tcctacctgtttgtcctgcaagagtttcgtcagctcaacatactatcccaccctctttcc
ctgtctgagctgctattccgacactacctccctctggaagggggcaacgatgaaaagagc
gccattgtggattacctactttccaatccagagcaaagctgttgggtgctggatggctat
gaagagttttccagcaaactcaccagacaagaggtgcagacagagcttatggacccagaa
cagcctctgcctgttgcagacctcatctcagggctgttaaatcgccgtcttcttccagga
tgtactgtggtggtcacctgtcgtgcacgcgatgtcatggattttgaaggcatatcggat
aaagttgggcagctacaagggtgggaataccacgagatcaaggagtatgtggacaacttc
tttcaaattaaaggtcactcagcaaccaaagctattggggtgcaggccacagatctcctt
ctttccagtcgacacctacttgccatgtcatccctccctgcactctgcaacatctgctgc
atctgtctggagcatttactgctgaaaggggaagaccaacgagggacgcagataccggaa
gaaacaggaagtggcagaaggagaaaagcgagagaaaaacaagaaaaaggagtacagatt
gcagaaggaggaagaggagaagagggcagtataggagagagttatgcacaaagcagagat
caagggggaggaagaacgtggggtgaagacacaatgatggacggcacaaatggtagaggc
cagataccctccaccctcacccaggtctatctcactattcttggtgcctttctgaaccgt
gaccctaatacaagaggatgccctgatgagccaaagaccacaccacagagttttgtgtgt
gagctgagtcagctggcctggaaaggcttagaggaaagcaagatcctcttcatggaagaa
gacatctctcaggatgttttggagttttcagtcaggacagggctcctcgcacaggtggag
ctcagacgtgaggatgggattcttgtcaacttctaccgcttcattcatctgacaatacag
gagtttttggctgcactcagaattatgaccagtactgatgttagtgacatgcagctcaag
aagagatttagtctgagaactcgctggacgaccaagtcagaccagaggacggtctttact
gactctcttcacctgtatgtatgtggtctggcttccccccactgcactgcagccttggtt
caattagccaggacctctggtggaacaggaggccaaagttgggtccaaaaacgacaaacc
cttgttttgaaactactaaaaaacctgtgtcacagcaacaccctaactggaccaaagata
ttggatctttgccactgtgtccaggagagccaggacaaccaactagctaagcaggttgtg
ggtacgagacctaccttggagctgcgcaacatcacgctattacctaatgatattgatgct
ctggcttttgtagttaactcagtaggtgataatggcattggattggacttcagagcatgc
tcaatggagttggagtgtttagatgtcctgcccagttgtcagttcattcactacctcagt
tttcgcagccgcaagtatggcgacaagtttgcaaagaagttgtcctccattctgccaaaa
ttcacaacgctgaaaaaactagagttttgtggcgccagtctgactaccacaggagcagct
agtttggcctccactctacagaactgtccaaacatcacagaaatcaatctgagtgacaac
aatctgaaagacggaggaatcaaacacatagctgatatttttaccaaaccatcaagactg
gtcctggtaaggctgggtcgaaacaacagctctctggaagcagtggactatctcattggg
aaaatgtcttcatgctttaacatccagcaccttaatgcagatgggaagaaggaattgacc
gtaactttcttccaaaattccgatttgaaccgccatataactaaatctgaaccaacaatc
agcttgttgaaccagacatggagcaagcctaagatgcaaaaagttgcaaagtcactggca
cggtgccctgccttgtcggtcctggatatgtctggaggccatttagatgttgaaactctg
aggacactgactgactttttgccaaagttcaacgtcaccaaaaagatcattgtgaatgac
agcttgtcttcggtggagagtttgatgattctgactgctctgctgtataaatgtcctgcc
gtggtggagcttcatatcagactacagagtcctttccaggtgtccatattgtttcctgga
ggcaaagaaaaaccggcaaatgaaacatctaaagtgctctgtctcagctgctgttgtctg
ctgcctactcatctggacagagtgtggaggagtttgggagcctcttctgatctcactttg
ctggatctgtccaataactctttaggcaacaaaggattgaagaaagtgttggacatcctg
cctcgtcttagtaacatccaggaagtaaatgtcagtaacaatgggattggcatggaagga
gtggtaatgctggctggtgcattgtcctcccatgacaacttaacacaaattcacatcagt
catggagacagagaccaggtgattctgaagttcggccctgacaaaagggatgacaaaatg
cagctaaagatgttcaggataaacaacagcagcctcatgccatcagacacaaaccgaatc
tgtggacgattggtcctgtgtcgctcccattttgagttagatttgtctcacagctcattg
ccagacaaggctattgagagtctggtgaagattctgccaaagatggcatcactgcagaga
ctcaatgtcagccacagcatcacatccacagctggagccttgatgttggtcagatgtttg
actgtcagtcagcgagtcacatcagtggagattgcgcctcagattgaatccttcattcat
tttgccagtgtgaaaaccgaacaagccagctgcaggttaactcgttgtaacctgaacggt
gaacacttggaaaggctgctcgagatcctacagcagggtccccatctgtctgacctggat
ttatcaagcaaccgactggaagatgaaggagttaagtgtttcctggattctctacaaaag
ctcaaaatcaccagctatgtgaatttgagcaacaacggtctgagccagcaggggttgttg
gatgtggccagcacactgtgcatgtgtaacagcgtctccggtgtcgaagtcagtttggga
gcagaggaaaagtgtctcgtctggtttacacaatgtgaaggttgtgtaaaaacgctgagt
gtcagagagagtagtttggaacgtgactatctggtcagattagcagagattgtctctacc
tgtcccagtctcaccaaactggaattcaagaacaatttgctgcagtcggattgcattgaa
gactttgtgaaactgttgaacagcagtcagaggggattcagtgtcagtattgaggaacgt
tggatcagatctgaggaagctgttagtttggtgtgtcgctgtctgggcctcagcagcaac
atacacactatcagggttcacaacaacactctacacctgtctttgatgaagtccactgaa
ataacctcagtcagcctcgtggactgtgcagtagaggggtaccagcttgcatctatgacg
agcatcatctcgaggtgtccttcactgacagagctggacttctcccacaacagcctgggt
gtagaaggagctgagtttctctgttctgtcctgccctcgctaccaaatctcacttgtctc
agtattggttccaaagaggcttgtgtgacggtggttgagaagctctcagaggccttgctg
caggttgcaggcattaagtgcttaaacctatcaggtcatgtgattagtgacacagcagcc
cagactatgacccaaatgtgtccccgtctaaaatcgctcaatctgtctcattgtaggtgg
tcagcggctgcagggttgcagctcgtcacagcactgcaactatgtgtcagtctggaaggt
ctttgtctggactccctacagctgaatgcagagagcagtgtgtgcctgggacaagcacta
aggaatatcaactctatacgcagtctcaagctaaataagattgatacagtgatgggcccg
tcaaaagcaaacggtttgctagatctcctagctgctatggagggactcacacgaatggag
gacatcgagctggacagctggaggatggctgatagaggaatagagcagctgaccagactc
cttcctatgtggacggaactcaggaagatcagtctatcgaaaaacctgatcagcgaccaa
tcaggagaaaagctacttgaagctttgaagagctgtagtcacctggaagagctgcatctg
tccagtaacagtctcggggatctcactgctgccaggatggcccaggttctaccatcactg
acgcacatcactgtgttggatatttcagagaacaggattggacatgaagggtcagtgagt
ctgtccaaagcaataacgtgcatgaagaacctcaccaagattcatctgacctctattggg
acttcagagctgtgtgctgtagctgccagtctggcccactgtcccctcatacaggatgtg
ggtctgggatggaataattgtggtgatgaagtggcagtggagctggccagagttatacct
ctctgtcagaagctgaacagaatagatcgggaaagtctaacaggagtgtttttggagggg
aaaggcccctggttagagccttacgcccggtctgggtctgcagcttttcaggctgtggag
aaacaaagtctccctcagtga
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