Etheostoma spectabile (orangethroat darter): 116694404
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Entry
116694404 CDS
T08457
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116694404 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116694404 (edc4)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116694404 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
116694404 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
RMC1_N
PIN_8
Motif
Other DBs
NCBI-GeneID:
116694404
NCBI-ProteinID:
XP_032380027
LinkDB
All DBs
Position
8:complement(24509505..24548246)
Genome browser
AA seq
1396 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSTDTPSGDGLRMPSFNGELNGLLGAAGLLGSSD
RSTMSNSTRPISTDLSSAQECQIICLSGDDGSTCIPITSNNVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVGFAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQITCTGSKILDQVVVHVRRPEDYPLNSHRRLIW
CPFIQDENEENQDDTSQTLALLHEDMAEVWDLEVLRANNSSWPVDATDLKEGLITIKGHN
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGVQDKPRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLPSLKASLDLS
AQYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVSHSRLRHTEV
LPAEEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLGSSSTVFLPHSD
SQDGFAGFSDHLTDQSSDKDSGSGSQTDLRKIPSLPAPTDFLSNSGASSGTKLMTPDAFM
TPSTSVPASPGSSASSLTVVTAISSNSDSTNRAIDDVSQSPNRAENSSSSSSSSSLALSN
STSSPRAASVVLMPGLENLQALASPIGPLTLESPQVLDSPLLPPLASPTRARSPDVISSA
STAMSQDMPEIASQTLQLPRGLVSNLEPLPLSALQTDSMASAASALHLLTSSRTANNSSL
LALELGGADGPVGGPVESEPRLSNTPSLLENALSQENPGVGGGSSDGSVSHTPWPAAPDI
TRETRNSLRDNGLGDCSREESKDRHLSSPYHRRSYHLTQNDSQDAGAEQSDPDDEVASLA
SSSGNCGSRSSHRLPVKDWKTSPRGSPKVKRKTKKDDSESSQSRLMDSVQMNAEVQDELL
MLLRSQQRELTELRGQIEAMQSTIMAQVVHVLTSHQEKEQRRLERVLSESQNHQQQLQEQ
LSQQLSHTLSSVLTNRMDKVLREEMKKTVPQTISKSLEPVTGQLSNSIAAKLTAVEVTLK
ENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQGIVLPVFERGCQSMFQQINDSFK
QGTQEYIQQLETHMKNRKQKEQEGRDPMIGQLQQMTDSFQSSTDQLATNITANVRAEVQH
QIQMMVGNLQESILSHVQRIVKGEVSQAMKEQQAVVTSSIMQAMRSAASTPVPTAHLDYQ
TQQANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLI
QQLSSNLTTRSELKINYLEDAVMNLDHSDPLTRDHMSSVLAQVRPKLFAFLQQDPHSPLS
KRARRLMMMLQGLVSH
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaatatagatattgagggtgcgacccagcatctccgggacattctc
aagctcgaccgtcccgggaacagcaccgatacaccatcaggtgatggtctgagaatgcca
tcttttaatggagagctgaatggcttattgggagcagcaggtcttctaggaagcagtgat
cggtcaaccatgtcaaattctaccagacccatctccacagacctcagcagcgctcaggag
tgtcagataatctgcctttctggtgacgatggctccacttgtatccccatcacctccaac
aatgtggagattgtggcaagtcaagattccagcatcaacagcaaggctcgcggcagcaac
aaggtgaagattcaacccgttgccaagtacgactgggaacacaagtattattatggcaga
ctgatagccgtgtccaactccttcctggcgtatgccatcagaggagccaacaaccatgca
atgattagagtcctgagtgtgggttttgctgagcgctccctactgaagggcttcactgga
gctgtcacagatctggcttttgcccaccttgactcctccctgttgggttgtgtagatgaa
gcgggcaacctgatggtttggcagatcacctgcactggaagcaagatacttgatcaggtg
gtggttcatgtccgacggccagaagactacccactgaactcccaccgtcgcctcatctgg
tgcccgttcatccaggatgaaaatgaggagaaccaggatgacaccagccagaccttagcc
ctgcttcatgaagacatggccgaggtgtgggacctggaagtcttgagagccaacaacagc
agttggcctgttgatgccacagacctaaaagaaggcctcatcacaatcaagggacataac
cagcgagtcagtgaaggggctctgtctccagatggaaccgtgttagccacagccagccat
gatggatacatcaagttctggcagatatacatagaaggggtacaggacaagccaagatgt
cttcatgagttgcggcctcacggaggacgtcccctctcttgccttcttttctgtgacaac
cacaaaagacaggaccccgaggttcctttctggcggttcctgataactggagcggatcag
aatcaggaattaaaaatgtggtgcactgtttcctggacctgtttacagaccatcaggttt
tctccagatctgttcaactcatcagttctgccaagtctaaaggccagtctggacctgtct
gctcagtatctcatcctcaccgacgtacagaggaaggttctatatgtgatggagctgcgg
caggatctggagaaaggaaaggccagtttcacggcagtatctgagttcctgttgacccac
cctgtgctcagcttcggggtccgggatgtctcccacagccgattgcgacacacggaggtc
ctccctgcagaggaggagagtgagagtatgacaacagagggcactcaaggaccaacagag
tccaagtctggcatccaaattaaactctactgtgttcacactaagagtctgcaggatgtc
cagatctggtttcagcccaacttgggttccagctcaactgtcttcctgccccattctgat
tcccaggatggttttgcagggttttcagaccacctcacggaccagagctctgacaaggat
tcaggaagtggctcccagaccgaccttaggaagatcccatcgcttcctgctcccactgac
ttcctgtcaaactccggcgccagcagtgggaccaagctgatgactcccgacgcctttatg
acaccaagcacttcggtaccggcatctcctggcagcagcgccagcagtttgaccgttgtg
acagctatcagcagcaactctgactcaactaacagagctattgacgatgtcagccaaagt
cctaaccgagcagagaacagcagcagtagcagcagcagcagcagtctggccctctccaac
tccaccagcagcccaagagctgcttctgttgtgctgatgcctggactggagaacctacag
gctttagcgtcccctattggtcctctgacactcgagagcccgcaggtcctggactctccc
ctcctgccacctctggcctctccaactagggcccgctcccctgacgtgatctcctccgcc
tccaccgccatgtcccaggacatgccagagattgcatcccagaccctgcagcttccgcgt
ggactagtgtccaacttggagcccctacctctgtctgctctccagacagacagcatggcc
tctgctgcatctgccctgcacctactcacttcatcacgcactgccaacaacagcagcttg
ttggccctcgaactcggaggtgctgatgggccagtgggcggcccagtagagtcagagccc
agactcagcaacacaccgtcactacttgagaatgccttatcacaggagaaccctggggtt
gggggagggtcctcagatggtagtgtcagccacacaccttggccggctgcgcctgacatc
actcgagaaaccaggaacagtctcagggacaatggtcttggagactgttcaagagaggag
tcgaaggacaggcacttgagctcgccttaccatcgacgctcctatcacctcacgcagaat
gacagtcaggacgctggcgcagagcagagtgaccctgatgatgaagtggccagcctggca
tcatcctcaggaaattgtggctctcgttcttctcacagactgccagttaaggactggaag
acctcaccacgaggctcgccaaaagtaaagaggaagaccaagaaagatgatagtgaatct
tctcagtccaggctaatggactcagttcagatgaatgcagaagtgcaggacgagttgttg
atgctcctgcgtagccagcagagagaactaactgaactgcgtggtcagatcgaagccatg
cagagcaccattatggcccaagtagtgcatgtccttaccagccaccaggaaaaagaacag
cgcaggctagagcgagttctgtcagagagtcagaatcatcaacagcagcttcaggaacaa
ctcagccagcagctcagccacaccctcagctcggtgctgaccaacagaatggataaagtg
ctacgagaggaaatgaagaaaacagtcccgcaaacaatctctaagagtctggagccagtg
actggtcagttgagcaattcaattgctgctaagctcaccgctgtggaagtcaccctgaag
gaaaatgtcagcaaggtggtcaaatccaagaacacaaccgatgcaattggtcgagcagca
gcagaagccatgcaaggacccatccaggcagcctataaagacgccttccagggtattgtg
ctgcctgttttcgaaagaggctgccaatccatgtttcaacaaatcaatgacagcttcaaa
caaggcacacaagaatacatccaacagcttgagacccatatgaagaacagaaagcagaaa
gagcaagagggacgagaccccatgattggccagctccagcagatgactgacagcttccaa
agctctaccgatcagctggccactaacatcacagctaatgtccgggcagaggtccagcac
cagatccagatgatggtgggaaatttgcaggagtctattcttagccatgtgcaacgaatt
gtcaaaggggaggtgagccaggccatgaaggagcagcaggccgtggtcacctccagcatc
atgcaggcaatgaggtcagcggccagcacacctgtccccacagcacacctagactaccag
acacagcaggccaacatcctgcagctcctccagcagggccagctcaaccaggctttccag
caggctctttcagcgactgatctgaacttggtcttgtatgtgtgtgagaccatcgactct
cagcaggtgtttggtcagcatccctgccctctcagccagcctgtgctgctgtcgctcatc
cagcagctctcctccaacctcacaacccgctctgagcttaaaatcaactacctggaggat
gcagtgatgaatctagaccacagcgacccgctgactagagaccacatgtcctcggtgttg
gcccaggtccgaccgaagctctttgccttcctgcagcaggacccacacagcccgctcagc
aagagggcgcggcgcctgatgatgatgctgcagggtcttgtcagccactag
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integrated database retrieval system
