Etheostoma spectabile (orangethroat darter): 116694795
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Entry
116694795 CDS
T08457
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
esp03009
]
116694795 (ighmbp2)
03012 Translation factors [BR:
esp03012
]
116694795 (ighmbp2)
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116694795 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
116694795 (ighmbp2)
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
Other ribosome biogenesis factors
116694795 (ighmbp2)
Translation factors [BR:
esp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116694795 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
Viral_helicase1
Helicase_RecD
nSTAND3
ResIII
AAA_22
AAA_16
UvrD-helicase
IstB_IS21
SLFN-g3_helicase
Flavi_DEAD
DnaB_C
ABC_tran
PhoH
AAA_28
AAA_25
NPHP3_N
ATPase
AAA
Zot
AAA_31
SRP54
SpoIIAA-like
NTPase_1
Motif
Other DBs
NCBI-GeneID:
116694795
NCBI-ProteinID:
XP_032380575
LinkDB
All DBs
Position
8:6805163..6812076
Genome browser
AA seq
995 aa
AA seq
DB search
MMAIEQFVSKTLELLQEEREAEIEETRVWQENISLKDLQNKGVCLLKLQIGSQSTGLYGR
TVVVFEPRKYLGFSSLPSNSFGPGDIVGLYDTGGCTAASQIGTGIVTRVSQASISVAFDD
SKDGLSFDTDALHNLLKLANDVTYKRMKNALNALNGYSNGPAANLINVLFGDTKPSSQSQ
PNEVKFFNSNLDNSQREAVSFTLSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCC
APSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSENANIIADIRKDMD
KAIKGIKKMSEKGDRVNFKREIGELRKELKTRESTAIAQILKSADVVLSTNTGASGDGPL
KFLPAGHFDWVVIDECAQALECSCWIALLRARKCILAGDYKQLPPTIKSQRAASKGLSLS
LMERLIQMYGDSVVRMLTVQYRMHSAIMEWASKEMYQGRLTAHSSVERHLLKDLPEVACV
DETSTPLLLIDTAGCGLSEMEVTDEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPY
NLQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAV
TRARRHIAVVCDTQTVQNHAFLKSLINHMTEFGEVRTAFEYIGDIVPQNYTRDHKDTKTS
TSASSSTSNKQKVKDRPLSRAKQQQKKSTGSNSDGNSTGTEKNTKSCTTALTEEEQEKNR
YAEVRAQVESFVKASNQSELQFPSSFNSHDRLLVHQIAEELGLVHESKGEGKDRCITVAR
PLVSTLAEETRQEEDEEAQEEETVLKPQMEPVCQPPLDLKRLHLERMKREQQKREENAQQ
KKQQNNIPPAQAQSLKKPKSAKGKSRMKAGACGIAAAAAPDEDFDTLINAVIKADSVCSF
VKCKASVLTLGQLCLFCNRQYCLGHHIPEVHGCGDKAKSHARMRISKEGILYAGSGKRDT
SMDPSKKAYLQRKLDSKLKDMSSQRKPKKDKENES
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgattgaacaatttgtgtcaaagacgcttgagcttctacaggaggagagggaa
gctgaaatagaagagaccagggtatggcaggagaacatttctctcaaggatcttcaaaat
aaaggagtatgcctgctgaaattgcagataggaagtcagtccacaggcctgtatggtcgc
acagtcgtcgtcttcgagccaagaaagtatcttggtttctcatctttgccgagcaacagc
tttggacctggggacattgttggcttgtatgacactggcggatgcaccgcagcttcacag
attggcacaggaatagtgacgagggtcagccaagcttctataagtgtggcctttgatgat
tcaaaggatggccttagctttgatacagatgctcttcacaacctcttaaagttagcaaat
gacgtcacctacaaacgaatgaaaaatgccttgaatgcattaaacggatacagcaatgga
ccagctgccaatctaataaatgtcctctttggcgacacaaaaccttcttctcaatcacag
ccaaatgaagttaaattctttaactcaaacctggacaattcccaaagagaagcggtgtct
tttacgctgtctcaaagagaactggctgtgattcatggaccaccaggcactggaaaaacc
accacagtggtggagatcatcctgcaagctgtcaaacaaggccaaaaggtcctgtgctgt
gccccctctaacgtggctgtggataatttagtggagaggttggcccggtgcaaggcaaag
gtcctcaggctcggtcaccctgccagacttttggagtccatacagaaacattcactagac
gccatccttgctcagagtgaaaatgcaaacatcatcgcagacatccgtaaagacatggat
aaagcaattaagggaataaagaagatgagtgaaaaaggagatcgggtgaactttaaaagg
gaaataggggagctaagaaaagagctaaaaaccagggaatcaacagccattgctcagatc
ctaaaaagtgcggatgttgtgttatcaactaacacaggtgcttctggtgacggccctctg
aagttcctgccagcagggcattttgattgggtggtgatagacgagtgcgctcaggccctg
gaatgcagctgctggatcgccctgctcagagcgcgcaagtgcattctggctggagactac
aagcagttaccacctactatcaaatcacaaagggctgcatcaaaaggcttgtctctcagt
ctcatggagcgactcatccagatgtatggggactcagtggtccgtatgctaacagttcag
tatcgcatgcacagtgccatcatggagtgggcctccaaagagatgtaccagggaagacta
acagctcacagctctgtagaaagacacttgttaaaagatctacctgaagtcgcctgcgtt
gacgagaccagcacgccacttcttcttatcgacactgcgggctgcggtctgagtgagatg
gaggtcacagatgagcaatctaaaggcaatcaaggtgaggtagacattgttgaactgcac
ataaaggccttgactgaagctggggttaaggctaaagacattgctgttattgctccgtac
aatctacaagtcgatcttctgcgtcagaaactttctgcgaggcatccggagctggagata
aagtcagtggatggatttcagggcagagagaaagaggctgtggtgttgtcattagttcgg
tccaacagaaagggggaagttggatttctggcagaggacagaaggattaatgtggctgtt
acacgtgcgagacgtcacatcgctgttgtgtgcgacacccagactgtccagaatcatgct
ttcttgaagtccctgatcaatcacatgactgagtttggtgaggttagaacggcatttgag
tacattggagacattgtgccacaaaactacacccgcgaccacaaagacacaaagacttct
acgtctgccagcagctccacgtccaacaaacagaaggtcaaagatcggcctctaagcagg
gccaagcaacaacaaaagaagtccactggtagcaacagtgatgggaattccactggtaca
gagaagaacacaaagtcctgcacaaccgcactgaccgaggaagagcaggagaagaacagg
tatgctgaggtcagagcgcaggtggagagctttgtaaaggcctcaaatcagagtgaacta
cagttcccatcatcgtttaactctcatgaccgcctgctggtccaccaaattgctgaggag
ctgggcctcgtgcatgagagcaaaggtgaggggaaagacaggtgtattactgttgccagg
cccctggtgtcaacactagctgaggagacgagacaagaagaagatgaagaagctcaggaa
gaagaaacggtccttaaaccccaaatggagccagtgtgtcaacctccattagacctcaaa
agattacatttggagcgaatgaagagggagcagcagaagagggaagaaaatgctcaacaa
aaaaagcagcagaacaacatcccaccagctcaggcccagtcattaaagaagcccaagtca
gctaaaggaaagagccgaatgaaggcaggcgcctgtggcatcgctgctgccgccgctcca
gatgaggactttgacacactcatcaatgctgtcattaaggccgacagtgtatgcagtttt
gtcaagtgtaaagcttctgtgctgacacttggacagctttgcctgttctgcaaccggcag
tattgtctcggtcatcatataccagaggttcatggctgtggggataaagccaagtctcat
gctcggatgagaataagcaaagaaggcattctttacgccgggagtgggaagagagacaca
tccatggaccccagtaagaaagcctatctgcaaaggaaactggactctaaactgaaagat
atgtcatcacagaggaaaccaaaaaaagacaaggagaatgaaagttaa
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