Etheostoma spectabile (orangethroat darter): 116694879
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Entry
116694879 CDS
T08457
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03013
Nucleocytoplasmic transport
esp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116694879 (upf1)
03015 mRNA surveillance pathway
116694879 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116694879 (upf1)
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116694879 (upf1)
5.6.2.5 RNA 5'-3' helicase
116694879 (upf1)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116694879 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
116694879 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
116694879
NCBI-ProteinID:
XP_032380636
LinkDB
All DBs
Position
9:complement(15042291..15063513)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSNAMYDAREALIPGSAYDRSSAGRPSNMYFQTHDQIGMIGAGPGHMAM
NIPIPLNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRIRGSAHQGASQGNGPNS
QASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQF
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggataccgaggaa
gcggagttactcggagcggacacccagggttctgagtacgacttcaccgacttcactctt
cccagccagacgcaaactcaaggccagacgcagagccagctggacagccaggtaaatggt
cctgatgagggtcttcacaacggtggagtggatgactccgtggccaaaacgagccagctg
ttggccgagctcaactttgaggaggatgaagaagacacgtactacaccaaagatctgcct
gtgcacgcatgcagctactgtggaatccatgacccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatgggcgtggcaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgacgctgcataaagatggtccactgggcgagacg
gtgctagaatgttacaactgcggctgtcgcaacgtcttcctcctgggcttcatcccggcc
aaggcagattccgtggtggtactactctgcaggcagccctgcgccagccagagtagcctg
aaggacatcaactgggacagctcgcagtggcaaccactgatccaggatcgctgctttctg
tcctggctggtgaaaatcccatcggagcaggagcagcttcgggctcgtcagatcactgcc
cagcagatcaataagttggaggagctctggaaggacaaccccactgccaccttggaagac
ctggagaaacctggagtggacgaggagccccagcatgtgctgctacgctacgaggacgcc
taccagtaccaaaacatctttggacctttggtcaaactggaggccgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcactctgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgacgagatctgcttgcggtacaagggagacctggccccactgtggaaaggcattggt
catgttatcaaagtccctgacaactatggagatgaaattgctattgagttgcggagcagt
gtcggagcacctgttgaaatcccccataacttccaggttgactttgtgtggaagtccacg
tcctttgacaggatgcagagcgccctgaagacgtttgcagtggacgagacctctgtgtct
ggttacatttaccacaaactgctgggccacgaagtagaagatgttaccatcaagtgccag
ctgccaaagcgcttcactgcccagggcctgcccgacctcaatcactcacaggtgtatgct
gtcaagacagtgctgcagaggcctctcagtctgatccagggtcctcctggcactgggaag
actgtcacctctgccaccatcgtctaccacctgtcacgacaaggcaacggaccagttctg
gtgtgtgctcccagtaacattgctgtggatcagttgactgagaaaattgacaagactgga
ctgaaggttgtcaggctttgtgccaaaagccgggaggccattgagtcaccagtgtccttc
ttggctctgcacaaccagatcagcaacatggacagtatgccggagcttcagaaactacag
cagctgaaggatgagaccggtgagctgtcgtctgctgatgagaaacgctacagggctttg
aaacgcacagctgagagggagctgctcatgaatgctgacgttatctgttgtacctgcgtt
ggggctggagatcctcgtctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccacagagccagagtgcatggtgcccgtggtgcttggagctaagcagctcatt
ctggtgggtgatcactgccagctgggtcctgtggtgatgtgtaagaaagcagctaaagca
ggtctgtcccagtccctgtttgaacgcttggtggttctggggattcggccaattcgcttg
caggttcagtaccgcatgcacccggctctcagcgctttcccctccaacatcttctatgag
ggctccctgcagaatggtgtcactgcagctgaccgcatcaagaaagggttcgacttccag
tggccacagccggacaagcccatgttcttctacgtgactcagggtcaggaggagattgcc
agctctggaacctcctaccttaacaggacggaggcttccaacgtagagaagatcaccacc
aggctgctgaaggctggagccaaacctgaccagattggcatcatcaccccgtacgaggga
cagcgctcctacctagtccagtacatgcagtttagtggttccctgcacaccaaactctat
cagcaagtggaaatagctagcgtggatgccttccagggcagagagaaggacttcatcatc
ctgtcttgtgttcgtgccaatgaacaccaaggcattggcttcctgaatgacccacgtcgt
ctcaacgtggcgctgaccagagccaagtatggtgtgattatcgtgggaaaccccaaggcc
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggagcaaaaagtcctc
gtggagggacccctcaacaacctgagggagagcctcatgcagttcagcaagccacgcaaa
ctggtcaacaccatcaaccctggggggcgttttatgagcaatgcgatgtacgatgcccgt
gaggccctcatccctggctccgcctatgaccgcagcagtgccggacgtccgtccaacatg
tactttcaaactcacgaccagattgggatgattggggcaggccccggtcacatggctatg
aatattcccatacccttgaatttggtgatgccaccaatgcctccacccagttacctgggt
cagaccaacggccctgctgcaggtcgtggagctatgaagggtaagcctggacgtggcggg
cggcagaggattcgtgggtcggcacaccagggtgcgagtcagggtaacggaccaaacagc
caggccagccaggatggggcctcccagcccttctcccaggggccgctaacacagggctac
atctccatgagccagccctctcagatgagccagcctggcctctcccagccagagctgtct
caggacagctacctaggcgatgagttcaagtcccaaattgatgtggctctgtcccaggac
tcgacataccagggtgaacgtgcataccaacatggtggggtgactggactgtcacaattc
taa
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integrated database retrieval system
