Etheostoma spectabile (orangethroat darter): 116694883
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Entry
116694883 CDS
T08457
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03018
RNA degradation
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116694883 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
116694883 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116694883 (lsm4)
03041 Spliceosome [BR:
esp03041
]
116694883 (lsm4)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116694883 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
116694883 (lsm4)
Spliceosome [BR:
esp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116694883 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
116694883
NCBI-ProteinID:
XP_032380641
LinkDB
All DBs
Position
9:15071921..15075404
Genome browser
AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGTQQNKQQGKGRGGAGRGLFGGRGRGMTG
PGRGQQQQQQQLQQQDKKPGKPQGMKNQH
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactatctctgctgaagactgcccagaaccatcccatgctggtggagctgaag
aacggagagacatacaatggtcatctggtcagctgtgataactggatgaacatcaacctg
agagaagtcatctgcacctcgagggatggagataagttctggaggatgcccgagtgctac
atcagaggaagcaccatcaaatacctgcgaatccccgacgagatcattgatatggtgaag
gaggaggtggtgtcgaaggggcgtggacgtggaggcacccagcagaacaaacagcagggc
aaaggcagaggaggagccggccgtggtctgtttggaggtcggggcagaggaatgactggt
cctggtcgggggcagcagcagcagcagcagcagctgcagcagcaggataagaaaccgggc
aaaccacagggaatgaagaaccagcactaa
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