Etheostoma spectabile (orangethroat darter): 116695589
Help
Entry
116695589 CDS
T08457
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04010
MAPK signaling pathway
esp04020
Calcium signaling pathway
esp04144
Endocytosis
esp04510
Focal adhesion
esp04540
Gap junction
esp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116695589 (pdgfra)
04020 Calcium signaling pathway
116695589 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116695589 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
116695589 (pdgfra)
04540 Gap junction
116695589 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
116695589 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
esp01001
]
116695589 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
esp04090
]
116695589 (pdgfra)
Enzymes [BR:
esp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
116695589 (pdgfra)
Protein kinases [BR:
esp01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
116695589 (pdgfra)
CD molecules [BR:
esp04090
]
Proteins
116695589 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Motif
Other DBs
NCBI-GeneID:
116695589
NCBI-ProteinID:
XP_032381838
LinkDB
All DBs
Position
9:28463610..28485827
Genome browser
AA seq
1465 aa
AA seq
DB search
MDGVKTYVVFGGILVVLVSVTSGLLPPTIVSNEEEFILQPNSVFNISCTGKRNVVWAEPL
PKNTFVYPGYYTATLFIYNATVENTGYYMCTYETPEGDLNLEEDNEAGIYVFVPDPQAPF
VPETPDNLVVPMDTPGVPISCRVSDPNSHVILRSVPSGEEMPAYYDNKMGFFGSLLPGQY
QCETTVNDQTMRSVTYTVEHEPPEDSEDFDVEVKASGETLRAGQPFNITCVAPPGLGFQQ
QWLHPKKQAVDAVQMKQTFPDRVLYILSIQQATSQDSGIYECSVTQHTSGEVRVSSVAVT
VFEENSFVALDHSGIQATEFVSPLEETEFTILIDAYPAPKVAWLKDGTDVAQNYYILTKT
SHLEGNRYQSILTLLQPLWKDNGNYTITALSGSSTAQFSFTLKVKAATAMMFPPSSAPVL
LPQVEEMVVLLHTPFTLTCRGEAKLAWKTPLYVHEQTQEDNSGLFVTTITVDSATAMHTG
YYTCYYSRNTTDDTEDSSVYIYVPDPDVPFVPSPVPFGNHVLSDHEEMEIQCRVSDPSAN
VTLVNVDTQQPVPSVYDSKRGALGVFTAGTYICKALINGEEHYSGEYIVHGWTGGAALHV
ELTAKRTALLVGDTITVTCLARGSEILEDHWKYPGKLANRAIKTVHENKRAQEILYTLTI
PQASTKDSGIYSCSITDIISNEDQTKELAVQVFASAFMSVRPEFGEYESAELDEVREFRA
KISSFPSAHVTWLKDGIPLSDVTAEISSSLRQLSETSYMSVLTLIRAKEEDSGNYTMRVE
NGDQIHDVGLNLEVKVPAVIVDLMDIHHGSATGQSVVCISRGQPTPVVEWFICKDIKHCA
NDSAAWVPLPANSTEVTMDSHIDEENNLESQVMFGHLESTLAVRCLARNQMAVVSREVKL
VSNGPHPELTVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVD
PMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSS
EKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRENFLSL
TPEKSKKELDIFGINPADESSRSYVVLSFENKGDYMDMKQADTQYVPMLEISNPHKYSDI
QRSNYDHPPSQKEDEMDVLLSDNMNEGLTTTDLLSFTYQVAKGMEFLASKNCVHRDLAAR
NVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTSLSDVWSYG
ILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMSKPEHAPQDLYEMMMKCWNSEPEKRPT
FLGLSETVSSLLPSSYKRHYERVNHEFLKSDHPAVTRVCVENDDAYIGITYKNQGKLKDR
ESGFDEQRLSSDSGYIIPLPDLDPVSDDECGKRNRHGSQTSEESAIETGSSSSTFAKREG
ETLEDITLLDEMCLDCSDLGEDSFL
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atggatggggtaaagacctatgttgtctttgggggtatcctggtggtgctggtttcagtt
acctctggactgttgccaccaaccattgtgtcaaacgaagaggagttcatcctgcagccc
aactccgtcttcaacattagctgtaccgggaaaagaaacgtcgtttgggccgaacccctg
ccgaaaaacaccttcgtttacccgggctactacacggcgacgcttttcatttacaacgca
actgtagaaaacaccggctattacatgtgcacatatgaaaccccggagggtgacctgaac
ttggaggaagacaacgaggcaggaatatatgtctttgtcccagatccccaggctccattt
gtccccgagacccccgataacttggtagtccccatggacacacctggggtccccatctcc
tgccgtgtgtctgaccccaactcccacgtcatcctgaggagtgtccccagtggagaggag
atgcccgcctactacgacaacaagatgggcttcttcggaagcctcttgcctgggcagtac
cagtgtgaaaccacagtgaacgatcagaccatgagaagtgtcacttatactgtggagcat
gagccccctgaggactcagaggatttcgacgtggaagtaaaagccagtggggagacgttg
agagctgggcagccttttaacatcacgtgtgtcgctccgcctggactgggatttcagcag
cagtggctccatcctaaaaaacaggctgtggatgcagttcagatgaaacagacctttcca
gaccgggtcctctatatccttagtatccaacaagccacctctcaggatagcggcatctac
gagtgctccgtcacccagcataccagcggagaggtccgagtcagcagcgtggctgtcact
gtctttgaggagaattcctttgtggcactggaccacagcgggattcaagctacggagttt
gtcagccctttagaggagacagagtttaccatcctcatcgatgcctacccggcccccaaa
gtggcatggctgaaagacggcacagacgtggcacagaactactacatcctcaccaaaact
agtcacctcgaagggaatcggtatcaaagcattctgacattactgcagcctctgtggaaa
gacaacgggaattataccatcacggctctcagtggctctagcacggctcagttctccttt
accctcaaagtgaaagccgccaccgctatgatgttcccaccctcctcagcgcctgtgctg
ctgcctcaggtagaggagatggtggtgctcctccacactcctttcaccctgacctgtcgg
ggagaggctaaactagcctggaagacaccgctgtatgtgcacgaacaaacgcaggaggac
aacagcggcctgtttgtcaccaccatcaccgtggacagcgccactgcaatgcacaccggc
tactacacatgctactacagccgtaataccactgatgatacagaggacagcagcgtctac
atctatgtgccagacccagatgttccctttgtgccatcaccggtgccttttggcaaccac
gtcctgtccgaccacgaggagatggagatccagtgtcgcgtgtccgatcccagtgcgaac
gtgaccctggttaacgtggacacccagcagccagtgcccagtgtgtatgacagcaagagg
ggagctttgggagtattcaccgctggaacctacatctgtaaggctctcataaacggagag
gaacactacagcggggaatacatcgtccatggctggacaggtggcgctgcgctgcatgtt
gagctgacagccaaacggacggctctgctggtgggagacaccatcacggtcacctgtctg
gcacggggatctgagattctggaagaccactggaaataccctggcaaactggctaatcgg
gctattaaaacagtacatgagaacaagagggctcaggagatcctttacacccttacaatc
ccgcaggcctcgaccaaagacagcggcatctactcttgctccatcactgatattattagt
aatgaagaccagacaaaggagctagctgtccaagtgtttgcatctgcgtttatgtctgtc
cggccggagttcggagaatatgaatcggcagagctggacgaggtccgggagttcagagcc
aaaatcagctccttccccagcgctcatgtcacttggctcaaagatggcatcccgctcagc
gacgtgacggcggagatctcctccagcctccggcagctcagcgagaccagttacatgagt
gttcttaccctgatccgggccaaggaggaggacagcgggaactacaccatgcgagtggag
aatggagaccagattcatgatgtcggattaaacctcgaagtcaaagtgcctgcagtcatt
gtggacctgatggacatccaccatggctcagccacaggccagtctgtggtgtgcattagc
agagggcagcccactcctgtggtggagtggttcatctgcaaggacatcaaacattgtgcc
aacgactcggctgcctgggtgcccctcccggccaactccacggaggtcacaatggactcg
cacatcgacgaggaaaataacctggagagccaggtcatgtttggtcacctggaaagcaca
ctggcggtgcgctgcctggccaggaaccaaatggccgttgttagcagggaggtcaaactg
gtatccaatggccctcacccagagctgactgtagctgccgctgtgctggtgctcctggtc
attgtcatcatctcactcattgtcttggttattatctggaaacagaaaccacggtatgag
atccgttggagggtcatagagtctgtgagcccagacggccatgagtacatctacgtggat
cccatgcagcttccctacgactccagatgggagttcccccgtgacagacttgtgctcggt
cgtatcctgggctctggagcctttgggaaggtggtagaaggcactgcctatggactcagc
cgctcccaacctgtcatgaaggtggcagtgaagatgctgaaacccacggcgcgctccagc
gagaaacaggccctgatgtctgaactgaagatcatgactcatcttggtccacatctcaac
atcgttaacctcctgggagcgtgcaccaagtcaggcccgatctacattatcactgagtac
tgcttctatggggacctggtcaactacctgcacaagaacagggagaacttcctcagcctg
actccagagaaaagtaaaaaagagctcgatatctttggaatcaaccctgcagacgagagc
agcaggagttatgtggtcctgtcatttgaaaacaaaggagactacatggatatgaagcag
gctgacactcagtacgtgcccatgctggagataagcaacccccataagtactcagacatc
cagaggtctaactatgaccacccaccctctcagaaagaggacgagatggacgtcctgctg
tcagacaacatgaacgagggcctcaccaccaccgatctgctcagtttcacctaccaggtt
gccaaaggcatggagtttctggcttccaaaaattgtgtgcatcgggacctcgctgccagg
aatgtcctcctctctcagggcaagatagtgaagatctgtgactttggactggcccgagac
atcatgcacgacaacaactatgtctccaaagggagcactttcctgccagtgaagtggatg
gcgccagagagtattttcgacaacatgtacacctctctcagtgatgtttggtcctacggc
atcctgctctgggagattttctccttaggtggcaccccatacccagggatggtcgtggat
tcaagcttctacaacaagatcaagagtggatacaggatgtccaaaccggagcatgcaccc
caggacctgtatgagatgatgatgaaatgctggaacagcgagcccgagaagagacctact
ttcctgggtctgagtgaaactgtgtcttctttgctgccctccagctacaagaggcattac
gagagggtgaaccatgagttcctaaagagcgaccaccccgctgtgactcgagtgtgcgtg
gagaacgacgacgcctacatcggcatcacctacaagaaccagggcaagctgaaggaccgg
gagagcggcttcgacgagcagcggctgagctcggatagcgggtacatcatccccctcccc
gacctggacccagtatctgacgacgaatgtggaaagaggaacagacacggctctcagaca
tccgaggagagcgccatcgagacgggctccagcagctccacttttgcgaagcgcgagggc
gagactctggaggacatcacgctgttggacgagatgtgcctggactgtagtgacctgggg
gaggacagcttcctgtga
DBGET
integrated database retrieval system
