Etheostoma spectabile (orangethroat darter): 116696166
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Entry
116696166 CDS
T08457
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116696166
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116696166
NCBI-ProteinID:
XP_032382842
LinkDB
All DBs
Position
2:5240761..5279948
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AA seq
1468 aa
AA seq
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MDNLITSSTVSSGGVSSRVVTESVTATSSDRSLSTGRSGERAASSSTQSSLLFTSSSSHA
AGSSGSGASKGPRGFGITTRGGSSAESSGGGSSAASGGSDVGFRAAGGQSSSLSNGFGSG
GREGKTEGLGAVTVSTVTKTSYSSGGSREAKKGSSSAYSPAPKERKGLTTMAAAFSDAFN
DSSSTNSSPEYHRKEYGASSANRGRSQSRESQIRVRLQSASPPASWTELDDVKRLLRGNP
SNSTSPPRSPNNTLPIPRKAIVDTRSKSESSSTDHYGSVWSGAVTSSFSYNTNPNNLSPS
STLYPPGVQNNLAVSSPSANSGLSASSTVPVYGVQNNLAGTSPVILSPTGSNTQIVYGVQ
KNVSGPGLSTTPVRPSSPIYDETPGKDFKFVLIEKENALVKKETERHVKTKDTGKQFMSA
APASASDSGDSLTREKQKLSSSTMEEGTYAKSASLKVSTKDKATYAEIRKVDSGFSFSSC
CSWWKWLLGLLLSLLLLLGLLFGLIALGEEVKQLKSRVNDLEAITGAKTSKFSSPDINII
NPLDIDRSPSGPTLANSDNVINLGAAGLGQDSAALQRAVQLLVRAELRSDAVRDTLAYSV
KGERGDPGPKGDPGLLGQKGDSGFPGLPGPMGHPGLDGPRGPKGSAGEPGSEGAPGQRGR
DGPMGPRGEAGPPGFAEKGDKGSQGEAGRPGPAGAAGPMGPKGAMGEQGASGSPGAPGPK
GFQGEAGAHGEKGDRGTPGLAGTKGDLGERGPRGPTGEPGQPGSHGPAGPQGSKGAAGDT
GSTGLPGVRGPPGLPGDVGPSGEPGLPGKIIAPVGSNTVAIPGPPGPAGPPGPAGIHGLS
GPVGPAGVPGQPGPKGDQGERGAKGDQGKPGEPGSSNTISATQTGLPGLPGPPGHPGAPG
PQGPPGETKQGPPGHKGPAGEPGIGLPGPPGEKGEPGSFVPTSETFFAGPPGPPGPPGPH
GPQGSAGEPGQPGLPGSPGLGYPGQPGPMGPQGLPGPEGPQGPQGPKGDTGVPGAPGIPG
GSYGSGAPGLPGPPGPPGRDGSGSGSDVGQYMAEYLQSDSIRQYLAGPPGPPGPPGPPGP
AGDGLVDDVANRVIAYIQSPGRGYDGTPGPPGPPGPPGSVSVNDLINTLQQEDVRRYIVG
PPGPPGDPGHSNYILNTQDVAERVLTLMNDRGTVGVPGPPGPPGPPGNLLATGYQALVGP
QGPPGSPGIPGPQGAPGPAGPPGPPGFVNFYGPPPDPINPLVSYAEHGKRETVKADPQQH
FKSDSVREVVFGPPGTPDPPGPPGHKGEPCLPCDRHCNLNTGEFYRLAGKVTEYIKFHGL
LRNVRDTERLVQGPPGPPGLPGMPGHSQWVSSRENVVDVVEYIKSHGLLCNHNGHAIQGP
PGPPGPPGPPGCNRLFGSHANVTDLVEYIKIHGAIVGPPGRPGQKGEMGLPGPKGERGEQ
GLPGLEGPQGHKGDATLLTKRRRRGSGV
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atggacaacctaattacatcctcgacggtcagctctggtggagtaagtagcagagtggtc
acggagtcagtaacagctacttcaagtgaccgttctctgagcaccggaaggtcaggtgag
cgagctgcatcaagcagcacacagagctcacttctgttcacatccagcagctcccatgcc
gccggctccagtggatcaggagccagcaagggccccagaggcttcggcatcactactcga
gggggctcctctgctgaatcctcaggtggagggagttcagcagcttcagggggatcagac
gtggggtttagggctgctggagggcagtcctccagcctgtccaatggttttgggagtggt
ggcagagaaggaaaaacggaaggactaggcgccgtgacagtttcaaccgtgacaaagacc
agctatagttcaggaggatctagggaagcgaagaaaggctcgtcctcagcttattccccc
gctccaaaagagaggaagggcctgaccaccatggcagcagctttctcagatgcctttaac
gacagttcaagcacaaactcctctcccgagtaccacaggaaggagtacggtgcatcttct
gccaacagagggagaagtcagagcagagagagtcagatcagagtcaggcttcagagtgct
tctcctccagcaagttggacggagctggatgatgtgaagcgtctgctgagaggaaacccc
tccaacagcaccagccccccccggtcccccaacaacacgctgcccatccccaggaaggcc
atcgtggacaccaggagcaagtctgagagctccagcacagaccattatggcagcgtttgg
tccggagctgtgaccagtagcttcagttacaataccaaccccaacaacctgtccccttcc
tccaccctatacccaccaggagttcagaacaacctggcagtcagctctccctctgcgaac
agtggactatctgccagcagcactgtccctgtgtatggtgttcagaataacctggccggt
accagccccgtgatcctctctcccacgggatccaacacacaaatagtgtatggtgtgcag
aaaaatgtgtctgggcctggactcagcacaaccccagtgagacccagcagccccatttac
gacgagacgcctggcaaagactttaagtttgtgctgatagagaaggagaatgctcttgtc
aagaaggagacagagcggcatgtcaagaccaaagacacagggaagcagttcatgtctgct
gcacctgcttcggcttccgactctggggactccctaacgagagagaaacagaagctgtcg
tccagcacaatggaggaaggaacatatgctaaatcagcaagcttaaaagtttccacaaaa
gacaaagccacctatgcagagatccgtaaagtagactcgggctttagcttcagctcctgc
tgcagctggtggaagtggctgctgggcctcctgctcagcctgctcctcctcctcggcctc
ctctttggactcatcgctttgggtgaagaagtgaaacaactcaagagccgtgtaaatgat
ttggaagccatcacgggcgctaagacaagcaagttcagctcacctgacatcaacatcatc
aacccgctggacatcgacaggagtccctctgggccgaccctggccaactcagacaacgtc
attaacctgggggctgctgggctgggacaggacagcgccgccctgcagagagccgttcag
ctgctggtcagggctgaactccgctccgatgctgttagagatacacttgcatactcagta
aaaggggagagaggagatccaggacctaaaggcgatccagggctgctaggacaaaaaggt
gatagcggctttcctggcctaccaggtcctatgggtcacccaggattggatggaccaagg
ggacccaagggaagtgcaggtgagccaggttctgagggagccccaggccagaggggccgg
gacggaccgatgggcccccgcggagaggctggaccgccaggttttgcagagaaaggagac
aaaggatctcaaggcgaggcaggacgtcccggtcctgctggtgctgctggaccgatgggg
ccgaaaggtgccatgggagagcaaggtgcctcaggaagcccgggtgctccaggtccaaag
ggtttccagggtgaagcaggagcacatggagaaaaaggcgatcgaggaacaccagggctg
gcaggaaccaagggggatctgggagagaggggaccacgtggaccaacaggtgaaccagga
caacctggatcacatggtcctgctggaccacagggttctaaaggagctgcaggtgacacg
ggttcgacgggacttcctggcgtgagaggaccacctggacttcctggagatgttggtccc
tcaggtgaaccaggactgcctggtaaaatcattgctccagttggctccaatactgtggcc
atccctggaccaccagggcctgctgggcctccaggtcctgctggaatacatggtctgtct
ggtcccgttggccccgctggtgtcccaggacaacctggacctaagggagaccaaggagag
agaggtgcaaagggagatcaaggaaaacctggcgagcctggtagttcaaatactatcagt
gccacccaaactgggctgcctggactgcctggcccaccaggacatcctggagcacctggt
cctcaaggtcctcctggtgagactaaacagggtcctccaggacacaaaggtcctgcagga
gagccaggaattggtttacctggacctccaggagaaaaaggagagcctggcagctttgtg
ccaacctcagaaaccttttttgctggaccaccaggaccaccaggaccaccaggaccccac
ggcccgcaaggttcagcaggtgaaccaggtcaaccaggtcttccagggagtccaggtctt
ggttacccaggtcagcctggacctatgggccctcagggtcttccaggcccagaggggcca
caagggccacaaggacctaaaggcgatacaggagtcccaggggccccaggaatccctggt
ggctcatacggttctggtgctccgggcctacctggaccacctggaccacctggacgagat
ggaagtgggtctggatccgatgtgggccagtatatggcagagtaccttcagagtgacagc
atcaggcagtacctggctggacctcctggacccccagggcccccagggcccccagggccc
gcaggggatgggctggtggatgatgtagccaaccgagtgatcgcctacatccagagtcca
gggagaggatatgacgggactcctggcccccctggccctccaggtccacctggctccgtc
tctgtcaacgacctcatcaacacattacaacaggaggatgtgaggagatacattgtcggt
ccaccgggacctcctggagatccaggccacagcaactacatattgaacacccaggatgtg
gctgaacgtgtcctcacccttatgaatgatagggggacggtaggtgtccctggaccccct
ggaccccctgggcctcctggaaacctgttagcaactgggtaccaagcacttgtgggtcct
caggggcctcctggttccccaggtatccctggtccacaaggtgcacctggaccagcgggt
ccacctggcccaccaggatttgtgaacttttatgggcccccccctgatccaatcaaccca
ctggtttcctacgcggagcacggcaaaagagagacggtcaaagcagatccacaacaacac
ttcaagagtgacagcgtaagagaagttgtgtttggacctcctggtacgccagaccctcct
ggacccccaggacacaagggagagccatgtctaccctgtgacagacactgcaatctgaat
accggagaattctaccgtttggctggaaaagtaactgaatacatcaaattccacggcttg
ctccgtaatgtcagagacactgaacgtctcgttcaaggacctccaggacctcctggactt
ccaggaatgcctggacacagccaatgggttagttcccgtgaaaatgtcgtggatgtggtg
gaatacatcaaatctcatggtctgctttgcaaccacaatggccacgccatccaaggacca
ccaggaccacctggccctccaggtccccccggatgcaacagattgtttggttcccatgca
aatgtcactgatttagtggaatacatcaaaatacatggagctattgtaggaccgcctggg
agaccaggacagaaaggggaaatgggactcccgggtccaaaaggagagagaggtgaacaa
gggcttcctgggctagaaggaccccaaggacacaaaggagacgccactctgctgactaaa
aggaggaggaggggcagtggtgtataa
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