Etheostoma spectabile (orangethroat darter): 116696320
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Entry
116696320 CDS
T08457
Symbol
ssrp1
Name
(RefSeq) FACT complex subunit SSRP1 isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
esp03000
]
116696320 (ssrp1)
03036 Chromosome and associated proteins [BR:
esp03036
]
116696320 (ssrp1)
Transcription factors [BR:
esp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
116696320 (ssrp1)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
116696320 (ssrp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_box_2
SSRP1_C
HMG_WDHD1
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
116696320
NCBI-ProteinID:
XP_032383077
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All DBs
Position
10:complement(16123800..16139213)
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AA seq
706 aa
AA seq
DB search
MGDTLEFSDIYQEVKGSWNDGRLRFSKQNVVYKSSKTGKVDSIQAGELNLAQWRRVCLGH
GIKLGTSSGHVYKYDGFRDTDFEKISEFFKANYKVELTEKDMCVKGWNWGTAKFSGPLLS
FEVNDSTAFEVPLSNVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPNQSDERQDPVE
AFAENVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDLSLTLNMSEEDVERRFE
GKLSKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEKKGMKGKIDEYSDSDDDQHDAYLERMKAEGKIREEGNDSEESDGESD
ESFNPGEEDDDIAEEYDSNASASDSSDDGGDSDDASEKKKPKKPKVVKEKKERKPRKEKK
QKETGGPKRPMSAYMLWLNSSRERIKSENPGISITEISKKAGEMWRRLGKDEKEEWDTKA
GEAKRNYEKAKQEFKESGGGATSSSKKESRKSGGKKEEKKRKSASADKERERGGGNDSFK
SKEFIETSESSSDSDHKSKSKRKKESDDEEEEEAVSTPASSDEESD
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacgctggagttcagcgacatttaccaggaagtcaaaggctcctggaatgac
gggcggctgcgtttcagcaagcaaaatgtggtttataagagcagcaagactgggaaagtg
gacagcatccaggcgggtgagctcaacctggcccagtggagaagagtgtgtttgggtcac
ggcatcaagctgggcaccagctcaggacatgtctacaaatatgacggcttcagggacacg
gactttgagaagatctcagagtttttcaaggccaactacaaagtggagctgacggagaag
gacatgtgtgtgaagggatggaactggggaacggccaagttctcaggaccgctgttatca
tttgaagtaaatgacagcacagcattcgaggtcccactgtccaacgtgtcccagtgtgcc
acagggaagaatgaagtcacgctggagtttcaccagaacgacgacacagaggtctccctc
atggaggtccgattctacgtcccgcccaaccagtctgatgaacgacaagaccctgtggag
gcgtttgctgagaatgtgttgtctaaggctgatgtgatccaggccacaggcgacgctgtg
tgtatcttcaaagagctgcagtgccttacacccagaggaagatacgacatccgtatctac
ccaactttccttcacctccatggtaagacctttgactacaagattccctacaccaccgtc
ctccgtctattcctgctgccgcacaaggatcagaggcagatgttctttgtgatcagtctg
gatcctcccatcaagcagggtcagacgcgttatcactttctcatcctgctcttctccaag
gaagaggacctcagcctcaccctcaacatgagcgaggaggatgtggagcgccgctttgag
ggcaaactcagtaaaaacatgtcagggtctctgtatgagatggtcagcagggtgatgaag
gccctggtcaaccgcaagatcactgtgcctggaaacttccagggccactccggggctcag
tgcattacctgctcctacaaggcgtcctcaggcctcctctatcccctggagaggggcttc
atctatgtccacaaaccccccgtgcacctgcgttttgaggagatctcctgcgtcaacttt
gcacgaggcaccactacaacacgatcatttgactttgagattgaaaccaagcagggaaat
cagtacaccttcagcagcattgagagagaggagtacggaaaactgtttgactttgttaat
gccaagaagctcaacatcaagaacagagggttcaaagaaaagaagggcatgaagggtaag
attgacgagtacagtgactcagacgacgaccagcacgacgcctacctggagaggatgaag
gctgagggcaagatcagagaagagggcaacgacagcgaggagtcagatggcgaaagcgat
gagtcgtttaaccccggagaagaagatgacgacattgcagaagagtacgacagcaatgcc
tcagcgagcgacagcagcgatgacgggggcgatagtgatgatgccagcgagaagaagaag
cccaagaaacccaaagtggtgaaggagaaaaaagagaggaaaccacgcaaagagaagaag
cagaaagaaaccggcggtcccaagaggccgatgagtgcctacatgctgtggctcaactcc
agccgcgagcgaatcaagtcagagaacccgggcatctccatcacagagatttccaagaag
gccggagagatgtggagacgactaggcaaagacgagaaggaggagtgggacacaaaggct
ggagaggcaaagaggaattatgaaaaagcaaagcaagagttcaaagagagtggcggagga
gcaacctccagttccaaaaaggagagtagaaaatctggaggcaagaaggaggagaagaag
aggaagtctgccagtgcagacaaggaaagggagcggggaggaggcaatgacagcttcaaa
agtaaagagttcatcgagaccagcgagagttcatcagactctgaccataagagcaagtcc
aagcggaagaaggaatcggatgatgaggaggaggaagaggctgtgtccacacctgccagc
tcagatgaagagtctgactaa
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