Etheostoma spectabile (orangethroat darter): 116696330
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Entry
116696330 CDS
T08457
Name
(RefSeq) zinc finger CCHC domain-containing protein 7-like isoform X1
KO
K12597
protein AIR1/2
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116696330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116696330
03016 Transfer RNA biogenesis [BR:
esp03016
]
116696330
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116696330
Transfer RNA biogenesis [BR:
esp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116696330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
TMEM106_N
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
116696330
NCBI-ProteinID:
XP_032383096
LinkDB
All DBs
Position
10:complement(16011930..16017120)
Genome browser
AA seq
489 aa
AA seq
DB search
MDYNKENKDDDGKEGGKHDRFFIEDSNSSEGEEAIEFSHQKHNSSCKQAARLSRESSPPL
LLAFNITSGRALQISSPSSSLDLKEEEEEDSEQPIEEWMILGGEEQVEDSSIQLNMSYWR
SSEEDSGDEDQNGKSVKNTWAVSEKDKRGAYQSLPSRYFAAGRSLICYVCNRTGHIAKSC
YYHKQKCPTCVLCGIQGHIQRDCPGRPCPSCGLPSHGLRACERPPVWNQHCQRCGISGHL
SDACPDTWRQYHLTIRLELPVRPWTVHTHKHKQCPAHCFNCSKRGHYGYECTKRRMISGI
FPSLPYVCHYDTMEDVLQCRTRKQKKVKELRSAGSLPLSDQQHLSEPTGESGEENQGTSS
TKQETCSRVGRRKKWPERRRERREVKRLRREAQVRREGGLMGRSRWNFDDEFCPADPVRS
ALHGHKQSTPPPQKKRRDEAGGRSRKSREAKRWKQRGGIKRGDLYPNGDTDISSESLLSP
KQRVRHRRR
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggactataacaaggaaaacaaagatgacgatggtaaggaaggcggaaaacacgaccgc
ttctttatcgaggactccaatagctcagaaggagaagaagcgattgagttcagtcaccag
aaacataacagcagctgtaaacaagctgcacggctcagcagggaaagctctcctccgctc
ctcctggcattcaacatcacctctggacgggcgcttcagatcagcagtccttcttccagt
ttggacttgaaggaggaagaggaggaggacagtgagcagcccatcgaggagtggatgatc
ctgggaggagaggagcaggtggaagactcaagcatccagctcaacatgagctactggagg
agctccgaagaggactctggagatgaagatcagaatgggaaatcagtaaagaatacctgg
gctgtatcagagaaagacaagcgtggtgcttaccagtctctgcccagccgctattttgcg
gctggtcgttccctgatctgttacgtttgcaacaggacaggacacattgccaaaagctgt
tactaccacaagcagaagtgtcccacttgtgtcctttgtgggatccagggccacatccaa
agggactgtccgggccgcccctgccccagctgcggactgccttcacatggcctcagggcc
tgtgaaaggcccccagtgtggaaccaacattgccagcgctgtgggatatcggggcacctc
tctgatgcctgccctgatacatggagacaatatcacttgacaatccggttagagcttcca
gtcaggccttggacagtccatacccacaaacacaagcaatgccccgctcattgttttaac
tgctccaaaaggggacattatggctatgagtgcaccaagaggaggatgatcagtgggatt
tttccttcactgccctatgtttgccattacgacacaatggaggatgtccttcaatgtcgt
accaggaagcagaaaaaagtcaaagagcttcggagtgctggatcactgcctctctcagac
cagcagcacttgtctgaaccaacaggcgagagtggtgaggagaatcaggggacgagcagt
acaaagcaggagacatgtagccgtgttggcaggaggaagaagtggcctgagaggcgcaga
gagaggcgggaggtgaagaggcttaggagagaggctcaagtcagacgagaaggaggacta
atggggagatcccggtggaactttgatgatgaattttgccctgcagaccccgtcaggtct
gcactccacggtcacaagcaatccacaccccctccacagaagaagaggagggatgaggca
ggtggcaggagcagaaagagcagagaggccaagaggtggaagcagagaggagggataaaa
cgtggggatttatatcccaatggtgacacagacatcagtagtgaaagccttctttcccca
aaacaaagagtccgccaccgacgaagatga
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