Etheostoma spectabile (orangethroat darter): 116696779
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Entry
116696779 CDS
T08457
Symbol
palb2
Name
(RefSeq) LOW QUALITY PROTEIN: partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03440
Homologous recombination
esp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116696779 (palb2)
03460 Fanconi anemia pathway
116696779 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
esp03400
]
116696779 (palb2)
DNA repair and recombination proteins [BR:
esp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
116696779 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
116696779 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
116696779
NCBI-ProteinID:
XP_032383834
LinkDB
All DBs
Position
2:24672902..24681162
Genome browser
AA seq
1439 aa
AA seq
DB search
MDTPAVPLVSWMPGPSEQIAEKFKDNMHCEEQLRTTLHCDDKEKLRRKLALLQREYLRTA
ERLQRAERLDAVRRHVGSRISQQDHQDQRDPQVTSIPCPHPPSLMLNTPKGTAPSIAQCQ
RHTGGPADSDNSVACPQTPDPSHDTAKGHRSTPALRLRSQRSRLRWERRSAGRSTDDSRE
EGLSQSERMETVRTEGSEERVKIEGTEVVNESEKLFPSTDSESPSLLPTHWNSSGQTETG
DIAGKDIQVLQKQREKETELRAEGKIESESTSLLLTGGHPAVHAEGMERDVTQNGRNKET
EEGKENRNTKGQRDVRLCEESSNKDTDKNAAEEIVNEKSHDNTAEINEGKRELIEGEHDV
KGVGLLDSCTLVDGLLFPAEYYVRTTRRMTSSQSQPDMQAVILSQLSAGRHRRSRGLNRR
TNNPERSPHTGTSLSSLATAPVDPLMESQSADTSAELNSQSSSEISDQISASYHQVIDAR
LSPTAITARPARGRRKRRGRGRGRPQTPRGSIDTHRLGLGETSHNPLPTSSLLSSSSSLH
GADRPKPRLTLGEAVPMQDDPQSVSILSTDTQPCSGDDGAQVSSASGHLGKFFPIFLKNS
NATNGSTQMSRSAASLQSLLLPSSSPAQMSLFPLPCLSPHPLVNKLMNFDITQDFHLPDD
QFASLKLHKLRQVAVDSGVEYFPSPSHNLRRSNRRSDTQSSSDTTMPLPLSLSLTPTVAN
SPHPPEPKQAATQSVNFLNLSIDHKLEDKLTSQSLTEGSAEQDMEIPGEQHTENLYPESP
IYIALTESVSVVQDCAADCADRYVEQDAVILNTHSQRSVSASNTHRTADHPVKPQPHVTF
ADRPACKVNDYVIRRSDELQIKESFIISSEEQTVCPGVVHPLEDQRSTNQTEDKATIKTL
SLDCPIQETLEDPPNCCTAVQFCKNSEARGASPVQHLNAAKDSKETTTSSPRDRLVGNKN
PDSTRVHSQLLLSPPLASEPCPFITSHLPSSAPANSPTLPSLGLTPHPPLTSSPTAPPLT
LAPRLSPSTEALSPPALCPCPSLLFSQPTPFPAGQTQASSVPLCTDDQRVEPPITVSSIQ
PQGSSGQVDVRIEETAEEHTMRCTHTLKAPAGSCLVDACXLPGSSGHLCVVAAGKWAVCL
WSQTSASDWSLTHTWAFNEPVINVFPVPDAAGLICVTLGQLEIREVRMLSCSSLLQVLLC
EGVVQTVVGVSKSRVVTSSHSASGSTLQVFTLSDSGSTRISQTLVCPGVCVGALARVDGL
SDALIGTDEGGNLFVWNLKTGQQLRRIILGDGLSHTSCLRGYSYCGVLFVLLQHQLLSSL
EEDTKEERKTTALLSLVAVNPLTGKSVLATRLHPPKAWSGRLCEADVHRSSVVGLSQSGC
VCVWDLGQRASSRMVWAPESEGWELARWGGGGTLVTGHHNGDVTLHCYSTSQASPCHGH
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggacacaccggcggtgccactcgtgtcctggatgccagggccgagtgagcagattgca
gaaaagttcaaagataacatgcactgtgaggagcagctgaggaccacactacactgtgac
gataaggaaaagcttcgtaggaagttggcactgttacagagggagtacctcaggacagct
gagaggctacagcgtgctgagcgtttggacgcagtgcggagacatgtggggagcaggatc
agtcagcaggaccaccaagaccagagagacccacaggtgacatccatcccctgtccccac
ccaccttcattgatgctgaacacccccaaagggacagccccaagcatagctcagtgccag
agacacactggaggtccagcagattcggataactctgttgcttgcccacaaaccccagat
cccagccatgacacagctaaaggtcacagatctactcccgccctgcgcctcaggtctcag
cgcagccgcctgcgctgggaaagaaggagtgctggcaggagcacagacgacagcagggag
gaaggactgagtcagagtgaaaggatggagacagttagaacagaaggaagtgaagagaga
gtcaaaatagagggaacagaggtggtgaatgaaagtgagaagctttttcctagtacagac
tctgaatctccttctctgctacctacacactggaactctagtggtcaaactgaaacagga
gatattgcgggtaaagacatacaagtcctacaaaagcaaagggaaaaagagactgagttg
agagcggaagggaaaatagagtcagagtcaacctctttattgctcacaggtgggcaccct
gctgtacacgctgaaggaatggaacgagatgtcacacaaaatggaagaaataaggagaca
gaggaagggaaggaaaataggaatactaaagggcagagggatgtaaggctgtgtgaagaa
agcagtaataaagacactgataaaaatgcagcagaggaaatagtaaatgaaaaaagtcat
gataatacagctgaaataaatgaaggaaaaagggagttgattgaaggagagcatgatgta
aagggtgtgggtctcctggactcctgtaccctggtggatggactacttttcccagctgag
tactacgttcgaaccacaagacgtatgacatcttcacagagccagcctgacatgcaggcc
gttatactttcccagctcagcgctggacgacatcgccgcagcagaggattgaacaggcgc
acaaacaaccctgaacgatctccacacactgggaccagtttgtcctcactggcgactgca
cctgtagatcccctaatggaatcacagtctgccgacacatctgctgagctgaacagtcag
agctcaagtgagatttcagatcaaatatcagcttcatatcatcaggtcattgatgctcga
ctttctcctacggccatcactgctcgtccagcaagaggtaggaggaagagaaggggtagg
ggcagagggagacctcagaccccacgaggctcgatagacacccatcgactaggccttgga
gaaacctcccacaatcccctgccaaccagctccctgctctcttcctcctcgtctctccat
ggagctgatagaccaaagccccgcctcactctgggagaagctgttccaatgcaggacgac
ccccagtctgtgtctatcctcagcacagacacacaaccctgctctggagatgatggagct
caggtcagctctgcctctggacatctgggaaagttctttcccatctttcttaagaacagc
aacgcgactaacggatccacacagatgagtagaagtgcagcaagcttgcaatctctcctt
ttgccctcctcctcacctgcccaaatgtctctgtttcctctcccctgtctgtccccccac
ccgctggtcaacaagctgatgaactttgacattacacaagatttccatctccccgatgac
cagtttgcttccctaaagctgcacaagctccgccaagtcgctgtggattcaggagttgaa
tattttccatcgccttctcacaacttacgcaggagcaaccggcgctctgacactcagagc
agcagtgacacaacgatgcctcttccgctctcgcttagcctcacgcccacagtggccaac
tcaccccacccccccgaaccaaaacaagctgctacacagtctgtaaacttcctgaacttg
tcaatagatcacaagcttgaagataaattgacaagccagtccttaactgaggggtcagcc
gaacaagatatggaaatccctggagagcagcatactgaaaacctttacccagagagtccg
atttacatcgccttaacagagtctgtgtctgtggttcaagattgtgctgctgactgtgct
gatcgatatgtagagcaagatgctgtgattctgaatactcatagccaaagaagcgtctca
gcaagcaacacacacagaactgctgaccaccctgtcaaaccacagcctcacgtcaccttt
gcagacagacctgcatgcaaagtcaatgattacgtcatcaggcgctcagatgaacttcaa
ataaaagagtctttcatcatttcatcagaagaacaaactgtttgtcctggtgtagtccat
cctttggaagaccagaggtctacaaaccaaacagaagacaaagctaccatcaagactctt
tccttagattgccctatacaggaaaccctggaggaccctcctaactgctgcactgctgta
cagttttgtaagaacagtgaagctcgaggggcgtctcctgtgcagcatctgaatgctgcc
aaagattcaaaagaaactactacaagttctcccagagacagattggtgggaaataaaaat
ccagactccacaagagtgcactctcagctcctgttgagccctcctctggcatcagaaccc
tgccccttcataacctcacacctgccctcctctgctcccgccaacagccccactctgcca
tcgctaggactcaccccccacccccctctgacctcctctcccactgccccacctctgacc
ctggctccccgccttagcccgtccaccgaggccctgtcccctccagctctctgtccttgt
ccatccctgctctttagccagcccacccccttccccgccggtcagacccaggcttcatcc
gtgccgttatgtacagatgatcagcgggttgaaccacctataacagtttccagcatccag
ccacagggctctagtgggcaggtggacgtgagaatagaggagaccgcagaggaacacaca
atgagatgcacacacacactgaaggccccagcaggcagctgtctggtggatgcatgcngt
ctgcccggatcctcgggccatttgtgcgttgtagcagccgggaagtgggccgtgtgtctc
tggagtcagacttctgcttctgattggagtttaacacacacctgggctttcaatgagcca
gtgatcaatgtgtttcctgtcccggatgctgctgggctgatctgtgtcactctgggtcag
ctggaaatcagagaagtgaggatgctgtcgtgctccagcctcttgcaagtgctgctctgt
gagggcgtcgtccaaactgttgtgggtgtgtctaagtccagagttgttacctcctcccac
tcagcatctggttccaccctgcaggtgtttacgctgtcagacagtggcagcacaaggatc
tctcagactctcgtgtgtcctggcgtttgtgtcggggccctcgctcgagtggacggcctt
tcagatgctctcatcggcacagatgagggcggaaacctctttgtctggaatttaaagact
ggacagcagctgcggagaattatcctcggagatggtttatcacatacttcctgtctcaga
ggatactcttactgtggagtgttgtttgtcctgctgcagcatcagttgctcagctctctg
gaggaagataccaaagaggaaaggaagacgacagccctgttgtctttggtcgccgttaac
cctctgactggaaaatctgtcctggctactcggctgcatccacccaaagcctggtctggc
aggctgtgtgaggctgacgttcaccgctccagcgtggttggcctgagtcagagtggctgt
gtgtgtgtgtgggacctcgggcagcgggccagctccaggatggtgtgggctcctgagagc
gaaggctgggagctggctcgatgggggggtggaggtacgctggtgactggacatcacaac
ggagacgttactctacactgttacagtacaagtcaggcctcaccctgccatggacattaa
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