Etheostoma spectabile (orangethroat darter): 116697576
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Entry
116697576 CDS
T08457
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03013
Nucleocytoplasmic transport
esp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116697576 (upf3a)
03015 mRNA surveillance pathway
116697576 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116697576 (upf3a)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116697576 (upf3a)
mRNA cycle factors
P-body specific factors
116697576 (upf3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
116697576
NCBI-ProteinID:
XP_032384759
LinkDB
All DBs
Position
11:complement(2850651..2857944)
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AA seq
463 aa
AA seq
DB search
MRSEKDQMTVGKEKSVVEIQFRDIPREQENIPCNFKPKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLSPHLFSRAYINFKNNEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKSGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRREIEKKRQREEEKRKRRDEER
RKRKEADKQKKLSDKDIKIKLLKKSDRDDDMDSDRMKDKSDIRETDRGKWEKAGGQTKLK
DPKEKGLPESEKEREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYCQ
DRARKEGHHHGYSYCPDIGDKLGKEDRQDLGNRKERLRNKVSEKDRPAMQLYQPGARNRK
RMSSAGKGYDCIPSPESGTEHGYEAVALATGLEKGFEKSKDEQ
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgtgggcaaggagaaaagcgtcgttgagatacaa
ttcagagacatccccagagaacaggaaaacatcccttgcaacttcaagccgaaagaagag
aagaaagaggtttttactaaggtggtgattcgaaggcttccacctaacctgtcaaaggac
cagctagaggaacagctcagtccacttccatcttatgactattttgagttctttcccgct
gatcaaagtctttctccccatttgttctccagagcatatatcaattttaaaaacaatgaa
gatatccttctgttcagggaccgatttgatggctacgtcttcattgacaacaagggccaa
gaatatcctgcagtggtggagtttgctcccttccagaaaatctcaaagaagaagttaaaa
aaaaaagatgccaaatccgggagcattgaagaagacccagagtataagcggttcttggag
aattactcctgtgatgaagagaagtccatggccaaccctgagactctgctaggagagata
gaggccaagaccagagagctcatagccaaacggacaacaccgctgttggagtacattaaa
aataagaaaattgagaaacagagaataagagaggagaagagagaagagaggagaagaaga
gagatcgaaaagaaacggcaaagggaggaggagaagagaaagcgacgagacgaggagaga
cgcaaacgaaaagaggcagataaacagaagaaattgtctgataaagacatcaaaattaag
ctcctgaagaaaagtgacagggacgatgacatggactcagaccgaatgaaggacaaaagt
gacatcagggagacagacagaggcaaatgggagaaagctggaggacaaacaaagttgaag
gaccccaaagaaaaaggtttgcccgagagtgaaaaggagcgagagcagcacggccgcaga
caaagagataaagatcaccgtgggaaagatgaagagaggaaacgacagcgacaccactat
gagtttgacaagtttatgcgccgcaaagatgagaccaaatgggggaaaggctactgccag
gacagagccaggaaagaggggcaccatcatggctattcttactgtcctgacattggagac
aaactaggaaaggaggacaggcaggacctgggtaacaggaaggaacgcctccgaaacaag
gtgagcgagaaggaccgtccagccatgcagctctatcagccaggcgcacgcaacaggaag
cgcatgagctcagcaggcaaaggctacgactgcatcccctcacctgaatctgggacagag
cacggctatgaggctgtcgctctggcgacggggctggagaaggggtttgagaaaagtaaa
gacgaacagtga
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