Etheostoma spectabile (orangethroat darter): 116697722
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Entry
116697722 CDS
T08457
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04382
Cornified envelope formation
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116697722 (col4a2)
04518 Integrin signaling
116697722 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116697722 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116697722 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116697722 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116697722 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116697722 (col4a2)
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116697722 (col4a2)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116697722 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116697722
NCBI-ProteinID:
XP_032385021
LinkDB
All DBs
Position
11:complement(5835264..5904269)
Genome browser
AA seq
1674 aa
AA seq
DB search
MSGTMQGQHNRGLKNLRLQLLCLSIAILASGVHAGGKKDSGPCGGRDCSGGCQCFPEKGA
RGQPGPLGPQGDQGPPGKPGDPGIQGPKGQKGDRGRSGIIGPKGNVGMTGVPGFSGNNGI
PGHPGQAGPRGRPGADGCNGTHGESGLMGPPGYNGAPGFPGQPGRKGQKGDSLEVTVYME
RFRGDPGIPGLNGRFGPQGNPGQQGNIGFTGPKGPPGPPGPRGPKGTMTKVLKGLRGEKG
DIGPPGPPGNSTHQQIQPTYGPPGPRGEKGLKGNIGDLSDIKGETGVMGFPGSRGPTGAD
GRPGPRGDLGEQGPKGRDGPKGVRGDPGPLISSGNWISGAGPTGPPGEQGPLGERGPVGN
QGFPGPPGRPASATQQQVWDFMGPFGMKGEPGDKGQPGDPGRPADRAGPPGSSGRPGVRG
PPGPKGTWAEFFKGAPGGRGRPGNAGYKGLKGDHGLCECTIVNSPPGLPGPAGETGDAGM
TGEFGQEGDLGEPGPQGENGFPGPPGLSGEPGQKGRKGEPRVASLKGYPGDSGDPGRNGE
AGAVGAPGQNGLPGKPGSQGLPGEGPIGEPGDKGFPGRPGRPGAPGLSGEEGKVLGGVKG
RRGLPGDDGHAGYDGVPGTPGSPGGCSPTGDGGQVDVTGPCDAFPGPPGLPGPPGPSGLP
GYPGEPGQKGPQGPHGAHGEKGETGDQGIGGRPGPPGFSGPRGDLGVPGRKGSVGAPGLP
GANGRYGAQGEKGAHGEIFGASPGPPGDTGPPGLQGNKGVTGDPGEQGYPGMAGMPGMIG
SRGERGPTGLQGEEGRPGPAGKYGYPGDPGRAGPPGPRGNTGQPGLPGERGTEGDLGPPG
PVGLKGNPGTHGNDGAFGEHGPSGEMGKPGADGPPGLPGMKGFKGSSGMSGFEGTRGNIG
VKGFSGFNGEPGLPGQVGLKGVKGQSGEKGDRGLRGAPGVKPHIPAQMIVDMKGAKGDKG
HYGNQGFTGPRGVKGLPGVPGYDGTHGLPGNPGNKKGYHGDPGPEGLPGMKGMPGLTGNR
GITGFDGMPGKRGIKGSPGAYGATGDKGRKGVKGETGDRIDLPGTIGLRGEHGLSGEPGQ
KGLIGQPGDRGTPGFGGIDGRKGESGDPGISGYPGSDGQKGTPGNQGQKGFPGIPGKDGH
PGFPGFPGNKGFPGLKGLYGLHGLKGQKGIPGTPGLDTTGPAGESGIKGEKGEIGDPNSQ
PGAPGTAGLKGFQGPLGDHGQPGPPGLRGPVGPYGTPDRPGQSGDPGYKGPKGYQGSPGA
KGFPGVDAPPGEKGVPGVHGFPGLPGRKGFKGDQGSFGYRGPNGVSGKKGVKGEQGVMGV
PGVTGVKGERGPSGPKGNTGPTGVQGIPGDQGPLPIPIRIPGERGPPGPHGIQGPKGVRG
ETGPQGPPGDTGFMGPIGQKGMPGIGGRSGTPGFRGELGKTGHPGLQGMEGHRGNPGIRG
LPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMPKLWDGYSLLYFEGQEKAHNQDLGLAGSC
LPRFNSMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEAPS
VAIAIHSQDITIPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIE
CNGAKGTCHYFANKQSFWLTSVDQSFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaccatgcaagggcaacacaaccgaggactgaagaacctgaggctgcagctt
ctgtgcctctccattgccatcctcgcctcaggagtgcacgcgggtgggaagaaggacagt
ggcccgtgtggaggaagagactgcagcggaggttgtcaatgtttcccagagaagggtgcc
aggggtcagcctggtcctctaggtcctcagggcgaccaggggcctccagggaaaccaggt
gatccaggcatccaaggaccaaaagggcagaagggtgaccgtggccgtagtggcatcatt
ggtcctaaaggaaatgtgggaatgaccggcgttcctgggttttctggaaacaatggcatt
cctggccatccaggacaagctgggccacggggaaggccaggtgcagacggctgtaacggg
acacacggagaatcagggttaatggggccacccggctataatggcgcacctggttttcct
ggacagccaggccggaagggacagaagggagactctctggaggtcactgtgtacatggag
cgcttcaggggagatccaggcataccagggctcaacggaagatttgggcctcaaggaaac
cccggacagcagggtaacataggcttcacaggtccaaagggtcccccagggcctccaggt
cctcgtggaccaaagggtacaatgaccaaagtgcttaagggactccgaggagaaaaaggg
gacatcggaccgccagggccgccaggaaactctactcatcaacaaattcagcccacctat
ggccccccgggacctcgtggtgagaaaggtctgaaaggaaacataggagatttgtctgac
atcaaaggtgaaaccggtgtgatgggattccctggatcacggggtccaactggtgccgat
gggcgtcctggaccaaggggggatttaggtgaacaaggaccaaaaggcagagatggtcct
aagggagtcagaggtgacccaggaccattgatttcatcaggaaactggatttcaggagct
ggacctaccggtcctcctggtgagcagggtccactgggagagagaggcccggttggaaac
caaggattccctggacccccaggacgccccgcctctgcaacacagcaacaagtttgggat
ttcatggggccatttggtatgaagggagagccaggagataagggccaaccaggggatcca
ggacgtcctgctgacagggcaggacccccaggctctagcgggcgcccgggggtcaggggg
cctccaggacccaaaggaacatgggctgagttcttcaagggggctcctggtgggagagga
aggcctggcaatgcaggctataaaggactgaaaggtgatcatgggttgtgtgaatgcacc
attgtaaactctccaccggggctacctggccctgccggtgaaaccggtgatgctgggatg
accggagagtttggtcaggaaggtgatttaggagaaccaggcccccaaggagaaaacgga
tttcctggacctcccgggctcagcggtgagccgggccaaaaaggtcggaaaggcgaaccg
cgtgtggcctcactgaaaggatatcctggagactcaggggatcccgggcgaaatggtgag
gcgggagcggttggtgctccgggccaaaatggtttgcctggtaaacctggtagccaaggt
cttccaggagaaggtcccataggagaacctggagacaaaggtttcccaggtcggcctggt
cgacccggtgcacctgggctaagtggagaagaaggtaaagtccttgggggagtcaagggc
cgacgtggtttacccggtgacgacggccacgcaggctatgacggagttccaggaacacct
ggcagcccaggcggctgtagtccaacaggagatggaggacaggtggatgtaacaggtcca
tgtgatgcttttccaggacctccggggctgcctggacctccaggacccagtggattacca
ggttacccaggtgagccgggtcaaaaaggaccacagggcccacatggagcacatggagag
aaaggagaaacaggagatcaaggcataggtggccgtcctggaccaccaggtttttccgga
ccccgtggagacttgggggttcctggcaggaaaggttcagtaggagcccctggacttcca
ggtgcgaacggtcggtatggggcacaaggtgagaagggtgctcacggagagatctttgga
gcatcaccaggacctcccggagatacagggccgcctgggcttcaagggaataaaggcgtg
accggtgatccaggagagcaaggctatccaggaatggccggcatgcctggtatgattggc
tccaggggtgagaggggccctacgggcctgcagggggaggaagggaggcctgggccagcg
ggcaagtacggctaccctggtgatcctgggcgagcaggtccacctgggccacgtggtaat
acaggacagccaggtttacccggagagaggggaactgaaggagacctgggacctccaggt
ccagttggattaaaaggcaacccaggaacccacggtaatgatggtgcctttggagagcat
ggcccatcaggtgaaatgggaaagcctggtgcagatggaccccctggacttccaggaatg
aagggattcaaagggtcttcaggcatgtcagggtttgagggtaccaggggcaatataggg
gtgaagggcttcagcgggtttaatggggaacctggactgccaggccaagttggcttaaaa
ggagtgaagggtcaaagtggagagaaaggtgatcgtggtttgagaggggcacccggggtc
aagcctcacatccctgcccagatgattgttgacatgaagggagccaagggagacaagggg
cattatggaaatcaaggtttcactgggccgagaggtgttaagggtttgcccggtgtgcca
ggctatgatggaacccatggtcttcctgggaaccccggcaataagaaaggctaccatgga
gatccaggaccagaggggctgccggggatgaaaggaatgcctggccttactggaaatcga
ggaattacgggtttcgatggaatgccaggcaaaaggggaattaaaggaagtcctggtgcc
tacggcgcaacaggagacaaaggaaggaagggagtcaaaggtgagacaggtgaccgcata
gacctccccggaaccataggattgagaggagagcatggtctttctggagagccaggccag
aaaggattgatcgggcaaccaggggacaggggaacacctggttttggtggaattgatgga
agaaagggagagtcaggcgatccaggaatatcagggtacccaggctctgatgggcagaag
ggaactcctggtaaccaaggtcagaaaggctttcctggaatacctggaaaagatggacat
ccgggttttcctggcttccctggaaacaaagggttccccggcctcaagggtctttatgga
ttacatggactgaaaggacaaaagggtatccctggaacaccaggtctggataccacagga
ccagctggggaatcaggaatcaaaggagagaagggagagattggtgaccccaacagccaa
ccaggtgctcctggcacagcgggtttaaaaggcttccagggacctctaggtgaccatggt
caaccaggaccaccaggattacgcggccccgtaggaccatacgggaccccagacagacca
ggacagagtggggaccctggttataaaggacctaaagggtaccaaggttcccctggagcc
aaaggatttcctggtgtggatgctccccctggagaaaaaggtgtacccggagtacatggg
tttcctggactccctggaaggaaaggatttaaaggagatcaaggttcatttggatacagg
gggccaaacggtgtctctgggaagaaaggagtgaaaggtgagcaaggagtgatgggagtt
cctggtgttactggtgtgaagggagaaagagggccatctggtccaaaaggaaacactgga
ccaacaggtgttcagggaatcccaggagaccagggtcctcttccaattcccatcagaatt
ccaggagagagaggccctccaggtccgcatggtatccaaggaccaaagggggtcagaggg
gaaacagggccacagggcccccctggggatacagggttcatggggccgattgggcagaag
ggcatgcctgggattggtggtagatcaggaacgcctggatttcgtggagagcttggaaaa
acgggccaccccggtctgcaaggcatggaaggtcaccgtggaaaccctggtatccgcggt
ttacctggtatgccgggccgcagtgtcagcgtgggttacttgcttgtgaaacacagtcaa
tcagagcagacgcccatgtgtcctgtgggcatgccgaaactgtgggacggctacagtctg
ctgtacttcgagggccaggagaaggcccacaaccaggatcttggtttggctggctcctgc
ctcccacggttcaatagcatgcccttcctgtactgcaatcctggagacatttgctactat
gccagcagaaatgataagtcctactggctgtcgacgactgctcctcttcccatgatgcct
gtagaagagggagagatcaaaccgtacatcagccgctgctcagtatgcgaagctccatca
gttgccatcgccattcacagccaggacatcaccatcccacagtgtcctgcgggctggcgc
agcctgtggatcggctactccttcctcatgcacacagcagcaggaaatgaaggagggggt
cagtccttgtcgtcacctggctcctgcctggaggacttccgcacaacaccattcattgag
tgtaatggggccaaaggcacatgccactactttgctaacaagcaaagcttctggctaacc
tccgtagaccagtcgttccacactgagccggcatcagagacgctcaaagcaggccagctc
ctgtcacgcatcagccgctgccaagtctgcatgaagaacttgtga
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