Etheostoma spectabile (orangethroat darter): 116698001
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Entry
116698001 CDS
T08457
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03015
mRNA surveillance pathway
esp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116698001 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
116698001 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116698001 (sympk)
03019 Messenger RNA biogenesis [BR:
esp03019
]
116698001 (sympk)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116698001 (sympk)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116698001 (sympk)
U7-dependent histone pre-mRNA processing factors
116698001 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Cnd1
Adaptin_N
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
116698001
NCBI-ProteinID:
XP_032385583
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All DBs
Position
11:17905495..17921408
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AA seq
1277 aa
AA seq
DB search
MEFSSEEGDTQTPHVVDMTTSERVVDLLNQAALIATDEKLTVLKQVQELIINKDPSLLDN
FLDELIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLKDESVNVVKKAILT
LTQLYKVTLQWLVRSKAVSERQEACWDLVTQMKGDVLALLDSENDGVRTHAIKFTESLII
TLSPRTSDSDVPKRQEGDISLGKVPRDHSYIRYDVLCEEGKAALEKLLKFMVHPAISSIN
LTTTLGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHP
CSLEFQVQISTLLLDLGMPQSEITRSTPAPREQRKRPRHEEYTEGKKVKMEPTLMEDDED
KEEPAPISAPKPAAVPAAQSAIDLTAEFLSPLLSPDNVANLVLISMVYLPDVMPASFQAT
YTPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREGDTSKDEGSNEDSDAKDPLI
KRKVSALVGQAISVVGGYEKEKAPATEAPATVKRLPEPILPTAQTKMTGATGRKKVFRLS
DVVQPLSDTQIETLTSKAVKRILHSEKAIAQSGMSHVRVKLLSKLVTQFEGMMREDVLEF
ILEDIRTRSDLAFSLLYQEYNTYLSQLPSGLLDSYDQCLYTLLSGLQEKPEQRDGLFTKL
VLEAPIITESALDVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEK
VRTTALAFLKRMYEKDQLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVASPWTEETV
RQCLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVEN
CPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKSEVIQAL
PKLIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSNKCDMKSIIKATN
LCFGEKNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQ
VWKYPKVWEGFVKCCQRTKPQSYSVLLQLPPQQLSSVFERCPEMREPLLQHVLSFTPHQQ
AHIPDSTMLVLEANKKAEPKPVEPVMEKEMELIPAPVREEAPTAAMEETPTVALEKAPTP
TLALEKAPTVLEKAPILALEKAPTVAPEKAPSVALEKAPTVELEESETSEHQHPAIMKDE
EEPMEQEESGPVIQEETVDTVSQEELTRAGGTPSPRPELVEEPMEGPDPDPSHPREVKDV
EADVTEPEAESSSQDVE
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggagttttcttcagaggagggggacactcaaaccccccatgtcgtcgatatgaccacc
agtgaaagggtggtggaccttctgaaccaggctgcgctgatagccacagatgaaaagcta
accgtgctcaaacaggtccaggagctcatcattaacaaggatccttctcttcttgacaat
ttcttggatgagttgatcgccttccagactgataagtctatcgaagtgaggaaatttgtc
attggcttcatagaggaagcatgtaaaagggacaatgaacttcttctcagactgatcgcc
aatctgaacatgttgctgaaggatgaaagtgtgaacgtggtgaagaaagccattctcaca
ctcacccaactgtacaaagttactctgcagtggttggtgcgctccaaggcggtatcagag
aggcaggaggcatgctgggatctggtcacacagatgaaaggggatgttctggccttgctg
gactcagaaaatgacggcgttcgcactcacgccatcaaattcacagaatcattaatcatc
accctgtcgccgcggacgtcagactcggacgtccccaagcgacaggagggcgacatcagc
ctgggcaaagttcccagagatcactcttacattcgctacgatgttttgtgtgaggaggga
aaggctgcactggagaagctgctgaagttcatggtccatccggccatttccagtatcaac
ctcaccacaacacttggctccctggccaccatcgcccgccagagaccgatgttcatgtca
gaggtggtgcaggcgtatgagacattgcatgccaacctgccacccactctggccaagtct
caggtcagcagcgtgcgaaagaatctgaagctgcacttggtggccgtcctcaagcatccc
tgcagcctggagttccaggttcaaattagcactctgctgctggacctgggaatgccccag
agtgaaataacacgctccacacctgcaccccgagagcagcgcaaaaggcctcgccatgaa
gagtacacagaggggaaaaaggtcaagatggagcccaccctgatggaagatgatgaggac
aaagaggagccagcccctatctcggcccctaaaccagctgctgttccagcagcacagtca
gccattgacctcacggctgagttcctgtccccgctgctctcccctgacaacgtagccaac
ctggtgctcatcagcatggtgtatctgccggatgtcatgccggcatccttccaggccacg
tacacacctgttgagtcagcaggcactgatgcacagattaaacatctggccaggttgatg
gccacgcagatgactgcagctgggatcggtccaggactcgagcagtgcaaagccagagaa
ggcgacacaagcaaagacgaaggcagcaacgaggactctgatgctaaagacccgcttatc
aagcgcaaagtctccgcgctggtgggacaagcgatctctgtggtgggggggtacgagaaa
gaaaaggctccagcaacagaggcccccgcaacggtcaagaggcttcctgaacccatcctt
cccacggcgcaaaccaaaatgaccggggcgactgggaggaaaaaggtgttccgattgtcg
gacgtcgtccagcctttgtcggacacccagatcgagacgttaacctccaaagccgtcaaa
cgcatcctgcattcagagaaggccattgctcaaagtggcatgtcccacgtcagagtgaag
ctcctctctaagctcgtgacgcagtttgaagggatgatgagagaagacgtgctggagttt
attctggaggacatcaggacacggagcgacctggccttctctctcctgtaccaggagtac
aacacctacctcagccagctgccgtctgggctgctggacagctacgaccagtgtctctac
accctgctgtcgggcctgcaggagaaaccggagcagagggacggacttttcaccaagcta
gtgctggaggctcccatcataacagaatcagcgttggacgtgatccggcgttactgtgag
gacgagtctcgggtgtatttgggcatgacgacgctgaaggagctcatcgtcaagcggccc
tcgaggcagtttcagtatctgcatgtacttctggatctcagctcacatgaaaaagagaag
gtgcggaccactgccttggcttttctcaagcgtatgtacgagaaggaccagctcagggac
tacattgagaagtttgccctgaactacatgcagcttctggtccaccccaatcctccatct
ttgctctttggagctgacaaagacacagaggtggcctccccctggactgaagagaccgtg
agacagtgtctgttcctctacctgtccctgctgcccctgaaccaccggctggtccacgag
ctggcgtcggtctacaccgaggccatcgcggacatcaagcgcagcgtgcttcgagccata
gagcagccgatccgtggaatggggatgaactctcctgagctgctgctcttggttgaaaac
tgtcctaaaggagcagagacgttagttactcgctgtctgcacattttgacagataaagtg
cctccgtctccagagctggtggagcgagtgcgagacctgtaccacaaacgagtgccggat
gttcgtttcctaattccagtcataaatggcctcgaaaagagtgaagtaatccaggctctc
cccaagctgatcaaactcaaccccattgtagtgaaggaggtgttcaaccgtctgttgggc
actcaacacagtgagggaagttcatctgtgtcccctctaacgccaggagacctgctgatc
gccttgcacaacatagactcaaacaaatgtgacatgaagtccatcatcaaagctaccaac
ctgtgcttcggggagaagaacgtgtacacgtctgaggtcctggccgtggtgatgcagcag
ctgatggagcagagtcccctccccatgctgctcatgcgcaccgtcatccagtccctcacc
atgtacccccggctgggaggcttcgtcatgaacatcctgtcccgcctcatcgtcaagcag
gtgtggaagtaccccaaggtgtgggaaggtttcgtgaagtgctgccagaggaccaagccc
cagtcgtacagcgtgctgctgcagctgccgccccagcagctgtccagcgtgttcgaacgc
tgccccgagatgagggagcctcttctccagcacgtcctctccttcacgcctcaccagcaa
gctcacatacctgactccaccatgttggtcctggaagcaaataaaaaagcagaaccaaaa
cctgtggagccggtcatggagaaagagatggaactaattcctgccccagttagagaagaa
gctcccactgctgcaatggaagagactcccacagtggccctagaaaaagcccccactccc
accctggccctggagaaggctcccaccgtcctggagaaggctcccatcctggctctggag
aaggctcccactgtggccccagaaaaggctcccagcgtagcccttgagaaggctcccacc
gtggaactggaagagtcggagacgtcagagcatcaacacccggccatcatgaaagatgag
gaagagccaatggagcaagaagagtccggtccagtgatacaggaggaaactgttgacact
gtttcccaggaggagttgacgagagcaggggggacgccgtcgcctcgaccggagctggtg
gaggaaccgatggaggggcctgatccggatccttcacacccccgggaggttaaagacgtg
gaggctgacgtcaccgaaccggaggctgagagcagcagccaggacgtagaatga
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