Etheostoma spectabile (orangethroat darter): 116698323
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Entry
116698323 CDS
T08457
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116698323 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116698323 (prpf40a)
Spliceosome [BR:
esp03041
]
Complex A
U1 snRNP components
U1 related factors
116698323 (prpf40a)
Complex B
116698323 (prpf40a)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
116698323
NCBI-ProteinID:
XP_032386102
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All DBs
Position
11:10526735..10541236
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AA seq
879 aa
AA seq
DB search
MSSSDANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPSSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMIPGMMMPPRMPAAAVQPTGPPGVDLTAAAPGTVSTT
NGSPQEEQPKKKSLWTEHKSLDGKTYFYNTETKQSTWEKPDDLKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAMAPGITAAPAVQADNTATM
ATMIEAETATAVSEEHLSQAAMHHTAEVKTADAPVASSESSAVTEATASIEVTKEERPEI
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFNELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETTWEGIRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSPSKSPSERSSSGESERS
YKKSKKHKKKGKKRRHKSASPDSDTEKKGRERDGKREKDLEKDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggacgctaataatggcccgagccaagcgcccccttatccaggtgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccgcctcatttccctcct
attggaatgccccctatgggacagcgaccatccagcatgactccaatgcctcctggtata
attccccccggtataatgccaccaatgggggcaccaccaatgggacagatgccaggcatg
atgccacctatgataccagggatgatgatgccccctcgcatgccagctgcggctgtacaa
ccaacgggaccgcctggtgttgatttgacagctgctgcacctggtactgttagcaccaca
aatggatctccacaggaagaacagccaaagaagaagtccctgtggacagaacacaaatca
ctggatgggaagacatatttttacaatacagagaccaagcaatccacatgggaaaaacca
gatgatctcaaatctcctgcagagcaaatgctgtctaaatgcccttggaaggagtacaag
tcagacacagggaagccttattactataactctcagacgaaggagtccagatggacaaag
cccaaagagctggaggatctggaagctatgatcaaagcagaggagaatggaacggcagag
gcaatggctcctggcatcacagcagctcctgctgtgcaagcagataatacagccactatg
gcaaccatgattgaggcggaaactgcaacagcagtctcagaggaacacctgtctcaggcg
gccatgcatcacacagctgaggtcaagactgcagatgcacctgtggcttcctctgagagc
tcagccgtcacagaggccacagccagtattgaagttacaaaagaagaacggccagaaatt
cagaagaaaacgtacaaatggaacacgaaagaggaggccaagcaggctttcaaagaactt
ctaaaggagaagggtgtgtcgtcaaactcctcttgggaacaggctatgaaaatgattatc
aatgatcctcgctacagcgcactacccaaactgagtgagaagaaacaggcgttcaatgct
tacaaagtccagacagagaaggaagaaaaagaagaggccagaattaaatacaaggagtcc
aaagagacctttcagaggttcttggagaaccacgagaagatgacatctaccaccagatac
aagaaagcagaacagatgtttaatgagcttgaggtgtggagctgtgtaccagagagagac
cggctggagatctatgaagatgtattgttctaccttgctaagaaagaaaaggagcaagcc
aagcagctaagaaagaggaactgggaagctctgaagaacattttggacaacatggccaac
gtcacataccgcaccacctggtcagaggcccagcagtacctgctggacaaccctaccttt
gcagaggatgaagagctgcagaatatggacaaagaagatgccctcatttgttttgaggag
catatccgggctctggagaaggaggaagaagaggagaaacagaagactcttctcagagag
agaagacggcaacgcaagaacagagaggccttccagaaattcctggatgagctccacgat
cacggtcagctgcattccatgtctgcctggatggagatgtacccgaccctgagctcagac
atccgctttgccaacatgctgggccagccgggttccactcccctagatctgttcaaattc
tatgttgaagacttgaaggcccgctaccatgatgagaagaggatcattaaagatattctc
aaggacaaaggttttctggtggaagtcaacactagctttgatgactttgggtcagtgatc
agctcagacaagagagccaccacactggatgcaggaaacataaagctggctttcaacagt
ttactggagaaggcagaagcccgagagagagagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagcagcctttaaaaacatgctgaagcaggccacaccacccctggagcca
gagactacatgggaggggatcagggagagatttttaaaagaatctgcctttgaagacgtg
actctggagtcagagaggaaaaggatattcaaagacttcatgcatgtcttggagcatgag
tgccaacatcaccactctaagactaagaagcactcaaagaagtctaagaagcaccacagg
aaacgatcccgctctcgatcgggctcagagtctgaggacgaggagtaccacaagaagaaa
aagaggtcaccgtccaaatctccttccgaacgctcgtcaagtggagaatctgagagaagc
tataaaaaatccaagaagcacaagaagaagggcaagaagagacgccataagtctgcatcg
ccagactccgacactgagaagaaaggaagagagcgtgatggaaagcgtgaaaaggacttg
gagaaagataaagagaacgacaagtctcgggggaaatctcgctcagactccaaacagaag
tctcctaaaagaaaagcagcaaaagaggagggcggctgggatacatcaggcagtgagctg
agtgagggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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