Etheostoma spectabile (orangethroat darter): 116698394
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Entry
116698394 CDS
T08457
Symbol
col4a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116698394 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116698394 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116698394 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116698394 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116698394 (col4a1)
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116698394 (col4a1)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116698394 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116698394
NCBI-ProteinID:
XP_032386214
LinkDB
All DBs
Position
11:5904290..5951357
Genome browser
AA seq
1633 aa
AA seq
DB search
MLLPSGTLLLLAALYSSVDLTGAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGSMGPTGGLGEPGAPGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGSPGIPGCN
GTKGDRGRDGAPGFVGLQGPPGIPGISGMKGDPGGVIGIVPLKGDQGFPGTPGLPGSSGT
PGPIGPPGPRGYQGPKGDPGPPGLPGEKGDKLAFVSEKGDKGDQGFRGPPGPPGPPVHPS
FAEGSPTTVYLPGPQGDRGLQGDKGDKGQCIPHLAGVKGEPGPPGARGKPGKDGEDGLKG
EKGFPGSFGYTGSQGEKGERGPPGHGSGSPGPPGPRGLPGLNGEKGFAGPQGEAGPPGRH
IEGPRGETGQKGNVGEKGDSGLEGESLVGPPGQPGNTGPPGPPGPPIDLNECNIEKGAPG
PPGPPGLQGELGQKGDRGDTCVQCEGFGPPGLPGPQGPKGDRGPPGLVGGKGEKGGFGAP
GQPGRPGSAGVPGLIGAPGAVGEPGDIFAGTGLKGEKGLPGVPGSTGPPGRDGQPGRDGL
PGIPGFKGEPAKEGIKGERGPDGDPGIIGSPGERGPPGLPGYGRPGEPGEKGSQGRPGIP
AXPGPSGLKGEPGKSVSTPGPQGIPGPRGENGKPGAQGIRGLQGDPGLPGFPGPKGEHGP
SGIGFPGPTGRKPGSRISGIPGAPGLPGEPGRPGQDGLTGKSGTPGQKGEPGRGLPGPKG
SQGLPGITGFQGEKGGVGLPGIPGQEGQTGPPGPQGVKGDLGPPGPPGLVGLPGAPGKGS
PGAPGPQGQAGEPGSYGREGVKGEKGYPGPPGLDMPGPQGEKGTPGFPGSPGPKGLPGPQ
GLPGRDGPIGNQGSKGEMGVIGTPGVPGFPGPPGTPGSPGPRGDPGITGPRGNDGETGAK
GERGDRGLQGPPGNMSEVDMEHMKGEKGDIGKPGDPGFAGEKGHRGLTGDPGMPGKDGEP
GLPGQPGEKGDPGFPGEPGGMGQPGQKGAVGEMGIPGPSGPKGSKGDIGTPGHHGFRGTD
GQKGDKGIAGDPGIGLPGPPGEKGQTGQPGFPGQPGERGLKGLEGMPGKPGLQGIKGDKG
TIGYSGQPGRPGEKGVPGLPGSEGERGQDGRPGEGGLQGPPGVPGEKGEPGVDGIPGSSG
ERGDTGAPGRGFPGPPGVLGGKGDKGSPGFPGPPGHPGVSGIKGDKGLPGSQGAQGETGE
RGLPGISLEGPKGERGETGQPGEAGSSGVPGPSGVPGRNGQKGDKGDQGLPGFQGESGHK
GDPGVTGLPGQSGLPGIDGQKGERGLQGVPGFPGTRGNFGDIGFKGEVGDRGFPGEKGNV
GPPGXPGPSTFIKGDIGFQGPQGFPGPQGPSGLPGQKGLQGVTGIPGPKGEDGIPGYHGQ
PGSKGDPGLPGPQGPRGHPGPPGPDGVPGQVGLPGPSSMDHGFLVTRHSQTVEVPHCPEG
TSLIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNRVNLPPEIYYPYGH
LPGAHPRDLAPITGKGHQTLLSRQATRYPAQSPKPPPYTILYTNVHTPIHTSAGAEGSGQ
ALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDNEMFTKPVPTTLKAGSLR
THISRCQVCMKRT
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcaccctgttactgctggcggctctttactcaagtgtagacctg
acaggggctgagggctgtggaacatcatgtggaaaatgtgactgcagtggtgtgaaagga
gcaaagggtgagcgtggatttcctggtcttcaaggtaatatgggatttccagggatgcag
ggacctgaagggcctccaggatcaatgggccccacgggaggtctgggtgaacctggagct
cctggactaaaaggagtgcggggtcctcctggtctgccaggtttcccaggaaacccggga
ctaccaggcatcaatggaaatgacggcccaccaggttcgccagggattccaggatgcaat
gggactaaaggagacagaggaagggatggcgctcctggttttgtcggtcttcaaggacct
cctggcattccaggaatttctggaatgaagggtgaccctggtggtgtgatcggaattgtt
cccctgaaaggagaccaaggattccctggaacacctggattacctggatcaagcgggact
cctggacctattggacctcctgggcctcgaggctatcaaggaccaaaaggtgatcctggg
ccccctggcctccctggagagaagggtgacaagctggcctttgtgagtgaaaaaggagac
aaaggtgaccaaggatttcgtggcccacctggccctcctggacctcctgtacatccatca
tttgcagaaggctcacctaccacagtttacttacctggaccacagggcgacagaggactt
cagggagacaaaggagacaaaggccagtgcatcccgcatctagctggtgtcaaaggtgaa
cctggcccgcctggagcaagaggtaaacctggaaaggatggagaggacgggctgaaggga
gaaaaaggcttccctggatcgtttggatacaccggttcccagggtgaaaagggagaaaga
ggaccaccaggtcatggtagtggttcccctggtcctcccggtcctcgtggtctcccaggg
ttaaatggagaaaaaggttttgctggtcctcagggagaggcaggtccgccaggacggcac
attgaaggacctcgaggagagacgggtcagaagggaaatgttggggagaaaggagacagt
ggtttagaaggagagtctcttgttggacctccgggacaaccaggaaacactggaccacct
ggaccacctggaccaccgattgaccttaatgaatgtaacattgagaaaggagctcctggc
ccacctggacccccagggttacaaggggaattgggacagaagggtgacagaggtgacacc
tgtgttcaatgtgaaggcttcggtccacctggattacctggcccccaaggccctaaagga
gatcgaggacctcctgggctagtaggggggaagggagaaaagggtggatttggcgctcct
ggacaacctggtagacctggttctgcaggcgtccctgggttgattggagcccctggtgct
gttggtgagccaggggacatttttgcaggtaccggtctgaagggggaaaaaggtctgcct
ggtgttcctggttccacagggccgccagggagagatggacagccagggagagatggcctc
ccaggtatacctggcttcaaaggagaaccggccaaagagggcatcaagggtgagcgtgga
ccagatggggaccctggtataattgggtctccaggagagaggggtccaccgggcctgcca
ggctacgggcgaccaggagagcctggagagaagggcagccaggggagaccaggcattcct
gccnatcctggaccatctggtctaaaaggtgagccaggcaaaagtgtaagcactcctgga
cctcagggaatacctggaccacgcggagaaaacggcaaacctggagctcaaggcatcaga
ggcctgcagggagacccagggttgccgggtttccctggaccaaagggggaacacggaccc
tctggaattggattcccaggcccaactggccgaaagcctggctcaagaatcagtggaatt
cctggagctccaggattaccaggagagccaggaagaccaggacaggatggcttgactgga
aaatctggtacacctggacaaaaaggtgaaccagggcggggtcttccaggcccgaaaggt
tcgcagggcctcccaggaattactggtttccagggagaaaagggtggagttggactacct
ggtattcctggacaagaaggtcagacaggacccccaggacctcagggagtcaaaggtgat
ttaggacccccgggacctccgggactggttggcttaccaggtgctccaggaaaaggttcc
cccggagcccctgggccacaaggacaagctggagagcctggatcatacggtagggaaggt
gtaaagggagaaaagggctacccaggtcctcctggtctggacatgccggggcctcaggga
gagaagggaacccccgggttcccaggaagcccaggtcctaaaggactgccagggccgcaa
ggcctaccaggccgggacggaccaattggaaaccaaggttctaaaggggaaatgggggtc
atagggacaccaggagtaccaggatttcctggaccacctggtacacctggatctcctgga
ccaagaggtgatcccggcattactggaccaagaggcaatgatggagagactggagctaaa
ggagaaaggggagatcgaggtcttcagggacctcctgggaacatgagcgaagttgacatg
gagcacatgaagggggagaagggagatattggaaaaccaggtgaccctgggtttgctgga
gagaagggccaccgtggacttactggtgaccctggaatgccaggcaaagatggagagccc
ggattacctggacaaccaggtgagaaaggagaccctggtttccccggagagcctggtggt
atgggacaacctggacagaagggcgctgtaggagagatgggaataccaggtccgtctggt
ccaaagggttctaaaggagatattggtacaccaggacatcatggattcagaggcacagat
ggacagaaaggagacaagggaatagctggagacccaggtattgggctcccaggacctcca
ggagaaaagggtcagacaggccagccaggattcccaggacaaccaggagagaggggtctg
aagggtcttgagggtatgcctggcaagccaggactacaaggaatcaagggagacaaagga
accatcgggtactcaggtcagccaggtagaccaggtgagaagggtgtgcctgggctgccg
gggtctgaaggagaaagaggtcaagacggtcggcctggtgaagggggcttgcagggacct
cctggtgttccaggagaaaaaggagaacctggagtggacggcatccctggatcctcaggg
gagagaggagacacaggtgcacccggccgaggtttccccggaccacctggagtgcttggt
ggcaaaggtgacaaaggtagtcctggcttccctggccctcctggacatccaggtgtctct
ggtatcaaaggcgacaagggacttccaggctcacagggggcccagggtgagacaggagag
agggggctccctggtatatctctggagggccctaagggagagaggggagaaacaggacaa
cccggagaagcaggatcctcaggagtaccaggaccctccggtgtgccaggcagaaatgga
caaaagggagacaaaggagaccagggtcttcctggtttccagggagagtcgggacataag
ggtgaccctggagttactggacttcctggacaatctggccttccaggtatcgatggacag
aagggagagaggggattgcagggtgtccctggcttcccaggtacaagaggtaatttcggg
gacattggattcaaaggagaagttggagacagaggattcccaggagaaaagggcaatgta
ggtccccctggtncccccggccccagcacctttatcaaaggagacattgggttccaaggg
cctcagggcttcccgggaccccaggggccatctgggctccctggacagaaaggactgcaa
ggtgtgacaggtattccagggccaaaaggtgaagatggcattcctggataccatggtcag
cctgggtccaaaggagatcctggccttccggggccacagggacccagaggacaccctggc
cccccaggacctgacggtgttccaggtcaagtgggtctccccggcccctcctccatggat
cacgggtttctggtaacccgtcacagccaaacggtggaggttccacactgccctgaggga
acctcgctcatatatgatggctactccttgctctacgtacaaggcaacgaacgttcccat
ggacaggacttaggtacggcaggcagctgtctaagaaagttcagccccatgcccttcctc
ttctgtaacattaacaaccgtgtaaatttgccccccgaaatttactacccctacggtcac
ctccccggagcccatccccgggacctggcccccatcacgggtaaagggcatcaaaccctt
ttatcacgccaggctaccagatacccagcccaatctccgaaacctcccccttacaccatc
ctctataccaatgtccacacacccatacacaccagtgctggtgcggaaggatcaggccag
gctctggcctctcctggttcctgcctggaggaattccgcagtgctccattcatcgagtgt
cacggtcgtggaacctgcaactactatgccaactcctacagcttttggctcgccaccatt
gaagacaatgagatgtttacgaaacctgtccccacaacgctaaaagcaggcagtctccga
acacacataagtcgctgtcaggtgtgcatgaagagaacataa
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integrated database retrieval system
