Etheostoma spectabile (orangethroat darter): 116698623
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Entry
116698623 CDS
T08457
Symbol
tnr
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116698623 (tnr)
04518 Integrin signaling
116698623 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116698623 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116698623 (tnr)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116698623 (tnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_PBP1
EGF_Tenascin
EGF_2
Pur_ac_phosph_N
FN3_Tor_3rd
Fn3_Dep-1_2nd
Interfer-bind
NDNF
DUF4998
DUF7949
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
116698623
NCBI-ProteinID:
XP_032386540
LinkDB
All DBs
Position
12:complement(7167450..7358014)
Genome browser
AA seq
1399 aa
AA seq
DB search
MCVWTAVVRFVPSMHLAQQHNRAAVPTAGWILVLALFLPLQGAGHAAPSGENKLVRTTRV
RRQIPGGNQPPFAPSANETLREQPVIFNHVYNINVPLESLCSVDLDASAPPAPGDGSRAE
LGSTPSVDGPMDQNGPTEYTEQTLDADSQVTFTHRINIPKAACGCPATATIQQLATRVEM
LEREVSMLRAQCGSGCCGENSAMGHMDFVPGCSGHGSFSFDLCGCICEEGWSGKNCSEPR
CPDDCSGQGVCVEGECVCDRDFGGDNCSEPRCPSDCSGRGLCIDGECVCEESFTGEDCMV
GRCLNDCSDQGLCINGTCQCRPGYVGEDCSLVYCANNCSKKGVCKEGFCVCQDGFAGDDC
NSVAPAMNVKIRGVTDNTVEVEWEGSVVMTDFLVTYTPSSPGGVQLEIRIPGNTTTCTIS
GLEAGMEYNINVFAVINNSISVPASITVSTYLSNPGGLVFKSITETSVEVQWLPFYYSFD
GWEISFIPKDNDGGMTAQLPSTITYFLQTGLRPGEEYTINLVALRDQGRSQPVTATVTTL
IDGPTQLIVRDVSDTVAFVEWTPPKAKIDQIVLRYGLVGGEGPRTTFRLQPTLSQYSLQV
LRPGSRYEVSVSGVRKGNESGSISTEFTTALSFFSEIDAPKNLRLLSKTSTTLELEWENS
EAEVEGYQVVYSTLAGDQYDKVIVPRNEGATTKTSLTDLLPGTEYGIGISAMKGSNQSTP
ATMNARTGLDVPMDLTVTASTDNTISLVWGVVQGPIDHYKITYTSSSGVATELTVPKDVT
TTTLMDLEPGTEYTITVAARRGRQQSNAATIDAFTGIRPVTHLYLSEVTSDSVSVAWSAP
APPADLFILSYSSADGTDTSKVTLDGSKTRSLVLGLLPSTQYTVSLITIQGDITSEPITA
SLTTGMDPPKEMTVSDVTEDAVTISWIRPLAPFEYYKLSYQSARGRVDSEVVYSDVTNYT
LSSLFPATEYEISLNAVRGSQESKVVSTSVFTAMDMPAELTALNITPQGALLRWNPPVSS
VDNYVLTLTHNQMTADTFLVEGNKQEHQLSKLKPSTTYSVALYATKGPLTSGTVITNLQT
PMDAPLNLTASEVNHRSALISWQPPIAEIDNYMLTYKSTDGSRKELILDAEDTWIRLEGL
AETTEYTVKLQAARGLDTSAVVSTTFTTGSRLFATPQNCAQHLLNGETLSGVYTIYINRD
PSQGVQVYCDMTTDEGGWIVFQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQRLA
AQGRYEMRIDMRDGQESVYANYDKFSLGDARNLYKLRIGEYNGTAGDSLSYHQGRPFSTK
DRDNDIAVTNCALSYKGAWWYKNCHRANLNGKYGESRHSQGINWYHWKGHEFSIPFVEMK
MRPFNFRSISSKRRRSAPV
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtgtggacagcagtggtgaggtttgttcccagcatgcatctggcacagcaacat
aacagggccgctgtgcccacagcaggctggatcctagttttggctctgtttcttcctcta
cagggtgccggtcatgctgctccatcaggagaaaacaagctggttcgtaccaccagagtg
agaagacagatcccaggggggaatcagcccccctttgctccctcagccaatgaaacactg
cgggagcaacctgtgatatttaaccacgtgtacaacatcaatgtacccttggagtctctg
tgctctgttgacctggatgcctccgcgccacctgccccaggtgatggttctcgtgctgag
ttggggtccacaccttctgtagatggtccaatggatcaaaatggaccaacagaatacact
gagcagacgctggatgctgacagccaggtaacatttactcaccgcatcaacatcccaaaa
gctgcatgtggttgtccagcaacagccacaatccagcaacttgccaccagggtggagatg
ctagagagagaagtttccatgctcagagctcagtgtgggtctggatgctgtggggagaac
tcagccatgggtcatatggactttgtcccaggctgcagtggccatggcagcttcagcttt
gacctgtgtggctgcatctgtgaggaaggatggtccggcaaaaactgttcggagcctcgc
tgcccggacgactgctccggccagggggtgtgcgtggaaggggagtgcgtgtgtgaccgc
gactttggaggcgacaactgctcagagccgcggtgcccttcagactgctcgggtcgcggg
ctgtgtattgacggagagtgtgtgtgtgaagagtccttcactggtgaagactgcatggtc
gggaggtgtcttaatgactgctcggatcaggggctgtgcatcaatgggacgtgccagtgc
aggcctgggtacgtgggagaggactgctcgctggtctactgtgccaacaactgcagcaag
aagggagtctgcaaggagggattctgtgtctgccaggatggatttgcaggagatgactgc
aactctgtggcaccggccatgaacgtgaagatacgaggcgtgactgataacactgttgag
gtggagtgggaggggtcagttgtgatgacagatttcttagtgacctacacaccaagcagc
cctggaggtgtgcaacttgagataaggattcccggtaataccaccacctgcactatctca
ggcctggaggcgggcatggagtacaacatcaacgtgttcgctgtcattaacaacagtatc
agcgtccctgccagcattactgtttcgacctatctctccaatccaggtggtttagtcttc
aaatctatcacagagacgtcggtggaggtccagtggttacccttctactattccttcgat
ggatgggagatcagcttcatccctaaggacaatgatggagggatgactgcacagctgccc
agcaccatcacttactttttgcagactggtttgagaccaggggaggagtataccattaac
ctggtggcactccgagaccagggtcgaagccagccagtcactgccactgtcacaacattg
attgatggccccactcagctgattgtgcgggacgtgtcagacaccgtagcgtttgtggag
tggacaccacccaaagcaaagattgatcagatcgtgttacgttacggcctggtgggagga
gagggtccacggaccaccttccgcctccagcccacactcagccagtactccctgcaggtt
ttgcgtcctggctcgcgttacgaggtgtctgtgagcggagtgagaaaaggaaatgaaagc
ggatccatttccaccgaatttactaccgctttatcgttcttctcagagatcgatgccccc
aagaacctgcggcttttgtccaagacctccaccaccctggagcttgaatgggaaaacagt
gaggccgaggtggagggctaccaggtggtgtacagcactttagcaggagaccagtatgat
aaagtcattgtaccacgcaatgagggagccaccactaagacctccctcacagacctgctg
ccaggcacagagtacggcatcggcatttctgctatgaaaggtagcaaccagagtacacca
gcaacaatgaacgccaggacgggtctggatgtgcccatggatctaactgtgacggcttct
acagacaacaccatctctctggtgtggggcgtggtccagggccccatcgaccattacaag
atcacctatacatcctcctctggcgttgctactgagctgacggtgcctaaagatgtaacc
accaccactctgatggacctcgagcctgggactgagtacaccatcactgtggcagcaaga
agaggaaggcaacagagcaatgcagcaaccatagatgccttcacaggaatcaggcccgta
acccacctgtacttgtcagaggtgacttccgactcagtgtcggtggcgtggagcgcccca
gcaccgcctgctgacctcttcatcctgagctacagctctgcagacgggaccgacacctct
aaggtgacgctggacggctccaagacgaggtcactggtcctggggctgcttccttctact
cagtacaccgtcagcctaatcacaatacagggggacattacctctgagcccattacagca
tcactcactacaggcatggacccaccaaaagagatgaccgtgtcagatgtgaccgaagac
gcagtgactatctcttggatcagaccactggccccatttgaatactataagctttcctac
caatcagccagaggtcgagtggacagcgaggtggtttacagcgatgtgaccaactacacc
ttgtcaagcctgtttcctgccacagaatacgaaatcagcctcaacgctgtcagagggagt
caggagagcaaagtggtcagcacctccgtcttcacagcgatggacatgccagctgagttg
acagctctcaacatcactccacaaggagccctgctgagatggaatccacccgtttccagt
gtcgacaactacgttctgaccctcacacacaaccagatgacagctgacactttccttgtg
gaaggcaacaagcaggagcaccagctgtccaaacttaagccaagcaccacctactctgta
gcactctacgccaccaaaggacccctcaccagcggcaccgtcatcaccaacctccaaaca
cccatggacgcacccctgaacctgacagccagtgaagtgaatcaccgcagcgctctcatc
tcctggcaaccgccaatcgcagaaattgacaactacatgcttacctacaagtcaaccgac
ggcagccgcaaagagctgatcctggatgcagaggacacctggattcgactggagggactg
gctgagaccacagagtacactgtcaagctccaggctgcaagaggacttgacaccagcgct
gtagtctccactaccttcactacagggagtcgtctgtttgcaacacctcagaattgtgcc
caacacctgctgaatggagagacgctgagcggcgtctacaccatttacatcaacagagac
cccagccagggcgtgcaggtgtactgcgacatgaccactgatgaaggaggctggattgta
ttccagcgtcgtcagaacggcctgacagacttttccaggaagtggagtgactatcgggtc
ggctttggaaacctggaggatgaattctggcttggtcttgacaacatccagaggcttgct
gctcagggccgttatgagatgagaattgacatgagggacggacaggagtcagtctacgcc
aattatgacaaattctcccttggagatgcaagaaatctctacaagctcaggataggagag
tacaatggcactgctggtgactctctgagctaccaccagggccggcccttctccacaaaa
gacagagacaatgacatcgctgtcactaactgtgccttgtcttacaagggagcctggtgg
tacaagaactgccaccgggccaacctcaacggcaaatacggcgagtccagacacagtcag
ggtattaactggtaccactggaaaggccatgagttctctattcccttcgtggagatgaag
atgaggccattcaacttccgtagcatcagcagcaagaggaggcggtctgcccctgtataa
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integrated database retrieval system
