Etheostoma spectabile (orangethroat darter): 116698699
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Entry
116698699 CDS
T08457
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116698699
04518 Integrin signaling
116698699
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116698699
09142 Cell motility
04820 Cytoskeleton in muscle cells
116698699
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116698699
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116698699
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116698699
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116698699
Hyaluronan
Extracellular matrix or blood plasma proteins
116698699
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
116698699
NCBI-ProteinID:
XP_032386680
LinkDB
All DBs
Position
12:complement(17687233..17703054)
Genome browser
AA seq
1018 aa
AA seq
DB search
MLGLEVIVVCLLFGALTHGQSTECIALNERNDCAVDVYFTIDTSETIALQESPPGALVES
IKTFAEQFAERLEDAELKGVVRLNWNIGGLHFSQDQREFSTIGPKSNFITGVKGIRYLGK
GTHIDCALTNMTEKMLRYPSTTSPGLVRFAVVITDGHVTGNPCGGIKMAAERAREKEIHM
FVVAASKNIEETGLREIANSPASVYRREFMAVDLSQGRATIHTDTIERIINTMKHLAFVQ
CYNVTCLETPGPDGPTGPRGQKGAKGDNGDPGPKGLKGRPGDPGIEGPIGQPGSKGQPGV
LGDKGELGTQGKKGVAGVGGRNGTDGQKGKLGRIGAPGCKGDPGDRGPDGHPGDVGERGF
AGTNGEKGDAGRPGRPGPSGLTGEAGPKGERGSPGSPGVPGLKGNPGIPGNPGLRGEPGR
RGDYGPKGAQGSDGAKGDKGEMGPEGLRGLPGEVGSKGTKGDNGLPGPRGPPGTAGEAGK
NGTRGDPGDAGPRGDPGQTGPKGDPGRPGFSYPGPRGSSGERGEKGNRGPRGGRGDCGPK
GEPGNKGPLGEGGEPGSQGEPGLRGPRGELGRDGDPGPEGDPGLTECDVMNYIRETCGCC
DCEKQCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSFAKDPNSETGTRVGVVQY
SHSGTFQAIQLNDPKIDSLTAFKDAVKRLEWIAGGTWTPSALKYAYDNLIRDSRRAKANV
TVVVITDGRFDPRDDDTLLKYLCSDGYNVDVSAIGIGDMFDQIEENESLKSIACQKDGRV
LGMKRFADLVAEEFINKIETVLCPEPVIKCPDLPCKSEPAVASCVQRPVDVVFLLDGSER
MGLEAHRKAKEFIENVARQLTLANGRSDERNARLALLQYGSPTEQRVEFALTHNLTVISD
SLARMTYMDSSSALGRAIIHAVNNLVVPQQGDRLARRNAELAFVFITDGITASEQLDEGV
TAMRRAEGVPTVIAMGADTDEEVLSKVSLGDMSAVFRGADYSMLNKPSFFERFIRWIC
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgcttgggttagaggtcatcgtggtctgtcttctttttggagccctgactcacggccag
tcaacagagtgcattgcactcaacgagaggaatgattgtgcagtagatgtgtacttcaca
atagacacatctgagaccatcgccctgcaggagtcaccccctggagcgctggtggagagc
atcaagacattcgctgagcagtttgcagagcgtttggaagatgctgaacttaaaggtgtc
gtgcggctcaactggaacatcggtggactgcacttctctcaggaccagagagagttcagt
accatcggacccaagagcaatttcatcactggcgtcaagggaatccgatacctgggtaag
ggtactcacatcgattgtgccctcaccaacatgaccgagaaaatgctgcgctacccctct
accaccagccctggtttggtccgattcgctgtggtcatcaccgacggccacgtaactggg
aacccatgcgggggcatcaaaatggcagcagagagggctcgcgaaaaggagatccatatg
tttgtcgtggcagcatcgaagaacatcgaggagacggggctgagggagatcgccaactct
cctgcgagcgtctacaggagggagttcatggctgtggatctgagccagggcagagccacc
atacatacagacaccattgagcgcatcatcaacaccatgaaacatttggcgtttgtacag
tgctacaatgtgacctgtctggagacaccagggcctgatggtccaacaggtcccagagga
caaaaaggagctaaaggagacaacggcgacccaggtccaaaaggattaaaaggtcgccca
ggagaccccggtattgagggtcccattggtcagcccggtagcaaaggacaaccaggtgta
ctaggcgataagggagaacttggtactcaggggaaaaagggtgtggctggcgttggaggg
cgcaatggtacagatggacaaaagggtaaacttggacggattggcgctcccggctgcaaa
ggagacccaggcgacagaggtcctgatggtcaccccggagacgtcggtgaacgtggtttt
gctggtactaatggagaaaagggtgatgccggacgccctggaagacctggtccatctggc
ctgactggagaggctggaccaaagggagagaggggaagtcctggatcacctggcgtccct
ggactgaaaggaaatccaggaatccctggaaatccaggactcagaggagaaccggggaga
agaggagactatggaccaaagggtgctcaagggtcagatggagctaagggagacaagggt
gaaatggggccagagggcttgagaggacttccaggtgaagttggaagtaaaggaacaaag
ggagacaatggcctgccaggccccaggggaccaccggggacagcaggagaggctgggaaa
aatggcaccagaggtgaccctggtgatgctggaccaagaggtgatcctggacagactgga
ccaaagggagaccctggaagacctggcttcagctatcctgggccaagaggatcatcgggt
gagagaggagagaagggcaatcgtggacctcgcggcggcagaggagactgtggtccaaag
ggtgaaccaggaaataaaggacctttgggagagggcggtgagccaggatctcagggggaa
cctggcctaagagggccaagaggagagcttgggcgtgatggagatcctggccctgaggga
gatcctggccttactgaatgtgatgtcatgaactacatcagggaaacatgtggctgctgt
gattgtgagaaacaatgtggagccctggacattgtgtttgtgatcgacagctctgagtca
gtgggtctgactaacttcaccctggagaagaactttgtcatcaacaccatcaacagactg
ggatcctttgctaaagaccctaattcagaaacaggcacaagagtgggagttgttcagtac
agtcacagtggaactttccaggccatccagctcaacgaccccaagattgattcactgact
gctttcaaggatgcagtaaagcgcttggagtggattgctggaggaacatggactccatca
gctctgaagtacgcctatgataacttgattagggacagccgcagagccaaagccaatgtc
actgttgttgtcatcacagacggacgctttgaccccagagatgacgacacgctgctcaaa
tacctctgcagcgatggatacaatgttgacgtaagtgccatcgggatcggggacatgttc
gaccagattgaggagaatgagagtctgaagagtatcgcctgccagaaagatggcagggtg
ctgggcatgaagcgctttgcagacctggtggctgaggagttcatcaacaagattgaaacc
gtgctctgtccagagcctgtcatcaaatgccctgatctcccctgtaaatcagaacctgcc
gtggctagctgtgttcagcggccagtggatgtggtgttcctattggatggatctgaaagg
atgggactggaggcccaccgcaaggccaaagagtttattgagaacgtagctcgccagctc
acccttgccaacggccgttcagatgagaggaatgcccgcttggctttgctgcagtacggc
agccctacagaacaaagggtggagtttgcgctcacgcacaatcttacagtgatctctgat
tcgctggcaaggatgacctacatggactcctcttctgctctgggccgcgccatcatccat
gctgtcaacaatctggtggttccacagcagggagaccgcttggctcgtcgcaacgctgag
ctggcctttgtgttcatcactgatggcatcacagccagtgaacaactggatgagggcgtt
acggctatgaggcgagcggaaggtgttcccacggtcatcgccatgggagcagacacagac
gaagaggtgctgagtaaggtgtcgctaggggacatgtcggccgtctttagaggagctgac
tacagtatgctgaacaaaccctcattctttgagcgctttatccgctggatatgctag
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