Etheostoma spectabile (orangethroat darter): 116698700
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Entry
116698700 CDS
T08457
Symbol
col6a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116698700 (col6a1)
04518 Integrin signaling
116698700 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116698700 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116698700 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116698700 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116698700 (col6a1)
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116698700 (col6a1)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116698700 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
116698700 (col6a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
116698700
NCBI-ProteinID:
XP_032386683
LinkDB
All DBs
Position
12:complement(17707638..17730671)
Genome browser
AA seq
1009 aa
AA seq
DB search
METLRALLALLCVFLAGAQTPTQRNIFADCPVDLFFVLDTSESVALRQKPPEYYIDQLKN
FTITFIDELKEMQHRCDRTLTWNSGALHYSDEVKLVRHLSDMRTDRQALKADIKGIDYIG
KGTYTDCAIKRGLAELLSSGSHYHDNKYIVVVTDGHPITGYKEPCGGVQEAANEAKQHRV
KVFAVAISPDQEDTRLSVIATDPSYRQNFTAADESRSTKLKTIRTIINMITNETKDACCS
YECNAPGGNPGQKGDIGAKGETGRPGMPGEKGDVGDVGNVGDPGPVGYSGMKGDRGGKGE
KGDRGHKGYKGDKGQSGRDGIDGRKGEAGFPGLAGCKGSPGSDGQQGEPGPKGDPGXYGQ
KGGKGDPGRDGEPGRPGNYGPMGPPGEPGPRGNNGDKGERGDDGPPGQDGGRGERGQVGE
KGESGSRGNRGPRGDPGEPGPRGEQGREGSSGPNGEPGELGRPGSPGYRGDEGAPGPEGP
KGPRGIKGAPGDRGQLGERGEDGAPGNGTAGCPGFQGYPGPRGDPGEPGGNGTPGPKGDD
GDAGDPGPDNNQPGPPGPKGAKGHRGPEGNPGPPGPPGPPGTDECEILDIIMKLCSCCEC
KCAAMDLAFVVDSSESIGATNFALAKDFIITVIDRLTKDQQLKFAGNDSGLSVVQYSGSK
AQEVVRLGKGIGSLLEFKQKVRELKWLAEATYTGEALSFTLNNTIVEMTHENKVVIVLTD
GRSDISRDKIPLNVLCGKDLRVGGLGVKDYSGREPNNEQLGELVCKNDPKPGFSFVLDNF
AELLEDSFLQNLTSRICQEKRCPDYKCPISFSESADILVMMDSSASVGQKNFQTSKAFVH
RLAERFLTSEKKRGATVNVAVGQYSRSASMEQGLTTNLTLLSRQIESATFQNDGTNVLEA
MEFAMKNLRGRGDASGGKKKLVLFSDGRSQAVTEPQLEKRVREVADARVELFVISVGSQV
NEANLRTLVSRGRRDDLTYAQRHLFRVPDYASLLRGVFHQTVSRRVSIP
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggagactcttagagctctcctcgcgctgctgtgcgtttttctggctggagcgcaaacg
ccaacccaaagaaacatttttgcggactgtccggttgaccttttctttgtactggataca
tctgagagtgtcgccctcagacagaaacctcccgaatattatattgaccagcttaaaaat
ttcaccattaccttcatagatgaactgaaggaaatgcagcaccggtgtgaccgcaccctg
acgtggaactcaggagcactgcactacagtgacgaagtcaaacttgtacgacatctgagt
gacatgaggactgatcgccaggccctgaaggccgacatcaaaggcatcgactacattggc
aagggcacatatactgactgtgccatcaagaggggccttgctgagctgctctccagtggc
tcccactaccacgacaacaagtacatcgtggtagtgactgatggacatcctattactggt
tacaaagagccttgtggaggtgtgcaggaggctgctaatgaagccaagcagcacagagtt
aaagtgttcgccgttgccatctcacctgaccaagaggacaccaggctgtcagtcattgcc
acagacccgtcctacagacagaactttactgctgcagacgagtccagatccaccaagtta
aaaaccattcgaaccatcatcaatatgatcacgaacgagacaaaggatgcgtgttgctct
tacgaatgcaatgctccaggagggaatccaggacaaaaaggagacattggcgctaaggga
gaaacaggtagaccagggatgccaggagaaaaaggagatgttggtgacgtgggcaacgtt
ggagaccctggacctgttggttatagtggaatgaagggagaccgtggtggcaaaggagaa
aagggtgacagaggacacaaaggctacaagggcgacaaaggtcaaagtggaagggatgga
attgatggccgcaagggtgaagcgggtttcccaggtcttgctggctgcaaaggatctccc
ggatcggacggccagcagggagagcctggaccaaagggagaccctggcncttatggacag
aaaggaggaaagggagatcctgggagagacggggaaccaggaaggcctggaaactatggc
ccaatgggacctccgggtgagccgggccctcgcggaaacaacggggacaaaggagagcgc
ggtgatgatggcccacctggacaggatggaggtcgcggcgagagaggacaagttggagag
aagggcgagtcaggttcccgtggaaacagaggtccaagaggagacccgggggagccagga
ccccgaggagagcaggggagggagggctcatctggtcccaacggagagcctggcgagctt
ggcaggcctggatctcctggctacagaggagatgaaggggcacctggacctgaaggaccc
aaagggccgagaggaatcaaaggagctccgggagacagaggccagctgggggagagggga
gaagatggtgcgccaggaaatggcactgcaggttgtcctggtttccagggttatcctggg
ccccgcggagaccctggtgagccgggtggcaatggaacccctggacccaaaggagatgac
ggggatgccggagatccaggccccgataacaaccaaccaggacctccaggacctaaaggg
gccaaaggtcacagaggacctgagggcaatccgggacctcctgggcctcctggaccacca
ggaactgatgaatgtgaaattctggatatcatcatgaagctctgctcttgttgtgaatgc
aagtgtgccgctatggacctggcattcgttgtggacagctcagagagtatcggtgccaca
aactttgcgcttgccaaagactttatcatcacagtcatagacagactgacaaaagaccag
caactcaagtttgcaggtaatgactctgggttgagtgtagtccagtacagtggatcgaaa
gcccaagaagttgtccgactggggaaggggattggtagcctcctcgaatttaaacagaaa
gtgcgagaattaaagtggctggctgaggccacgtacacaggcgaggcccttagctttact
ctgaacaacacaatcgttgaaatgacccatgagaacaaagtcgttatcgttctcacggac
ggacgttctgatatttcaagggataagattcccctcaacgtactctgtggtaaagatctc
cgggtgggtggtttaggagtgaaggactactcaggccgcgagcccaacaacgagcagctt
ggggaattggtttgtaagaatgaccccaaaccaggcttttcctttgtcctggacaacttt
gcagagctgttagaagactctttcctgcagaacctcacatccagaatctgtcaagaaaag
aggtgcccagactacaaatgtcccatctctttctctgaaagtgccgatattttggtgatg
atggacagctcggccagtgtgggccagaagaattttcaaacaagcaaagcttttgtccac
cgcttggctgagcgtttcctgactagcgagaagaagcgcggtgccactgtgaacgtggct
gtgggccagtacagccgaagcgccagcatggagcaggggctaactaccaatttgaccctg
ctgtctcgtcaaattgaaagcgcgaccttccaaaatgacggcaccaacgtgttagaggcc
atggaatttgccatgaagaatttacgtggacgtggggatgcatcaggaggcaagaagaag
ctggtgctattctctgacggcaggtctcaggccgtcaccgagccccagctggagaagcgc
gttcgtgaggtggcggacgccagggtggagctctttgtcatctccgttggcagccaagtc
aatgaggccaacttgcgcacgctggtgagcagggggcggcgggacgacctcacctatgcc
cagcggcatctcttccgtgtcccagattacgcctctctgctccgcggggttttccaccaa
accgtctcccgcagggtgtccatcccctga
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