Etheostoma spectabile (orangethroat darter): 116698863
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Entry
116698863 CDS
T08457
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03008
Ribosome biogenesis in eukaryotes
esp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116698863
09123 Folding, sorting and degradation
03018 RNA degradation
116698863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116698863
03009 Ribosome biogenesis [BR:
esp03009
]
116698863
03016 Transfer RNA biogenesis [BR:
esp03016
]
116698863
03036 Chromosome and associated proteins [BR:
esp03036
]
116698863
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116698863
mRNA degradation factors
5'-3' decay
5' exonucleases
116698863
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
Pre-60S particles
RNases
116698863
Transfer RNA biogenesis [BR:
esp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
116698863
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116698863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
116698863
NCBI-ProteinID:
XP_032386969
LinkDB
All DBs
Position
12:complement(19668785..19689635)
Genome browser
AA seq
1707 aa
AA seq
DB search
MGVPKFYRWIPERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKLWQNVNVYLSGHETPGEGEHK
IMEFIRSENSKPSHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKNQKRIS
APEETTFHLLHLSLMREYIDYEFSGLRTQIGSDYDLERIIDDWILMGFLVGNDFIPHLPN
LHISHDALPLLYKTYISALPTMGGYLNENGHLNLRNFEKYIEKLAEFDREHFSEIFVDLK
WFESKVGNKYLNEAAGLAAEREAASKETNKIEDSTSSERVIGEGKGGVGDDEEEEEDMFE
TEFRQYKRTYYMTKMGVDVVSDDFLAKQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAP
FLSDIRNLSELKLTFDLGKPFMPFQQLLAVLPAASKELLPESYRHLMTSENSPIIEYYPV
DFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPYNHKMTKEEKARNRHTECAVYSYDSEI
NFMYISTLPQLFPDIVHCHVRKADIPMDAWHVQLDHVSRRLDRSSLYFCGFPTLQHIKHK
FFKKKSGVVVFQQSSRGENMMLEILPSQDADAGCDDIAGQVLGKPVFVNWPHLEEARIIA
VSDGDVKFCLEEPPGVQRVYDRPSTPPPTKVTCLSDKEQKDWVKDVQGLTEHFLKRKGII
VNETSMVLYGQLLTGRKYVPKANGVVELEKQWAKQVLPFAYQTVVKNIKAFYSCLTSFKS
LDELFPPATTVFMVGNPYYGAMGEVQDSSDVIQDGRVRVVFNVPQEPQLEPLIQNQHKYC
VKYSPGYVLASRLGITSYLVSRFSGSIFIGRGSKRNPCGEQKANVGLNLKFNKKNEEVPG
YTKRTEKEWLYSAAVEELLAEYLDRFSEVFNSVSRNGHDDVFYEDDIWPEEDQNGAERVA
EITSWLKSHPVSSIGRTSCDLQVLDSAIVERIEEAVEKAKVKKSTKKVRVTVKPHLLFRP
LEQQQGVIPDPDSEYRLFDRVINTREGFTVPLGLRGTITGIKGADREAEVLYEVLFDEEF
AGGLCIRCTSPRCYRLPPCALINLSHGTRVDQTSHKLTAIVKPQPTTAANFNSQRELSGL
NHSPRSPFIPTQHNNKHSMGKAASQGNRNSPSKGPIQKQQSKEYNNVWQSLQNSGPPLNP
PAHWHNEGLSQQRKNQHSNEAAPVGGIRLLKKNEDANSLFPPQNTANKATTEFEDLIASL
KISTGNQQTPPPPAPPQAPTSQSDGPLSPQSFAMKGTLMLKEMLKIDGAGTGSPSSQETD
NTGGQQQNRRRSSKKLAANMNAPHGDTAVMASPALAVSANLSNAGLASKVSELTRVCVGL
GMAPPDFSYIGNRQGRTVVCQVKLSNGLMVHGPQCQSENDAKEKAAFFALQRLNSVGSGF
PLPPPLYPGVGQIRPPPLGAMGPVFSQQGGLLLPHQGFGPAPLWGMPLPPPHHQNQPFYG
AAGTFPGAARPQPATTVPIGSHNQFIPLQVTKKRVSANKKNQDTREFYSAAHVVTRNESQ
KAHNQHSQSLAQGEPQGGRVDQPHPYAANINPSSSSPGQVDGVSKTNAVLHTPPRQNVPA
TGHXPGSSGKRKHRKLAVNXEAAKVSE
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgaaattttaccgatggattcctgagcgctatccttgtctcagtgaagtt
gtcaaggaacatcagatcccagaatttgacaatctgtatctggacatgaatgggattatc
catcagtgttcccacccaaatgacgaggatgtccactttcgcatttccgaggaaaagatc
tttgctgacatcttccattacctggaggtgctcttcaggatcatcaagcctcgcaaagtc
ttcttcatggcggtggatggagtggcaccgagggcaaagatgaaccagcagagagggcgg
agattcaggtccgccaaagaagcagaggacaagataaaaaaagctctggaaaaaggagag
gtgcttcccacagaggctcgctttgactccaactgtattactcctggcactgacttcatg
gcaagactccaggagcagctcaagtattttgtccacaacaagctctccactgacaagcta
tggcagaatgtcaacgtctacctgtctggccatgagactccaggggagggagaacacaag
atcatggagtttattcgctcagagaactccaagccgagtcacgaccccaacacccgacac
tgcttatatggcctggatgctgacctgatcatgttgggtttgaccagccatgagccaaat
ttctccctgctcagagaagaggtccgctttggaggaaagaaaaaccagaaaaggatatcg
gctccagaggaaacaacttttcacttgcttcacttgtctctgatgagggagtacatagac
tatgagttctctgggctcaggactcagattggttcggattatgacttggagcgaataata
gacgactggattctaatgggttttctagtgggaaacgatttcatccctcaccttcctaat
ctgcacatcagtcacgatgctctgccgttgctgtacaagacgtacatcagtgctctgccc
accatggggggttatctgaatgagaatggccatctaaatctcagaaactttgagaaatac
attgagaagcttgctgagtttgaccgggaacatttcagtgagatatttgtggacttgaag
tggtttgagagtaaagttggaaacaagtatctgaatgaggcggccggattggcagcagaa
agggaagctgccagtaaagaaaccaacaagattgaggattctacctcatcagaaagagtg
attggagaaggaaaaggaggagtaggtgatgatgaggaagaggaggaggatatgtttgaa
actgagttcagacaatacaagcgcacctactatatgaccaagatgggtgtagatgtggtg
tctgatgactttctagccaagcaggccaagtgttatgtggaaggtatacagtggattctc
cactactattaccacggcgttcagtcctggagctggtactacccctaccactacgctccc
ttcctgtctgacatcaggaacttatcagagttaaagttgacctttgacctggggaaaccc
ttcatgcccttccagcaactgttggcagtcctgcctgctgccagcaaggagctgctgcct
gagagttacaggcacctgatgaccagtgaaaattcgcccataattgagtactaccctgtt
gactttaaaacggacctcaatggcaaacagcaggaatgggaggctgtggttcttattccc
ttcatagatgagaggtgcttactagcagccatggagccctataatcacaagatgaccaaa
gaagagaaggccaggaatcgtcacacagagtgtgcagtctactcatatgactctgaaata
aacttcatgtacatctccaccctgcctcagctgttccccgacatcgtccactgccatgtc
aggaaagcagacatccctatggatgcctggcatgtacaattggaccacgtcagcagacgt
ctcgatcgctcatctctgtacttctgtggcttccctacactgcaacacatcaaacacaag
ttctttaagaagaagagtggagtggttgtgttccagcagagcagcagaggggagaacatg
atgctggagatcctcccgagccaggacgcagacgcaggatgtgatgatattgctggacaa
gtactagggaagccggtgttcgtcaactggccgcatctagaggaagcgcgcatcattgca
gtgtctgatggcgatgtcaagttttgtctagaggaaccaccaggtgtccaaagagtgtat
gacaggccctccactcctccccccaccaaagtcacctgcctgtctgacaaggagcagaag
gactgggtgaaggatgtccagggactcactgaacatttcttgaagaggaaaggcatcata
gtgaatgagacgtcgatggttttgtacggccagttgctgacaggaaggaaatatgtcccc
aaagccaatggggtggtggaacttgagaaacagtgggccaagcaggtcctgccttttgcc
taccagactgttgttaagaacatcaaggccttttactcgtgtctgaccagctttaagagc
ttagacgagctctttcctccagcaaccactgtcttcatggtggggaacccttactacggt
gccatgggtgaggtgcaagactccagtgatgtcattcaagacggccgggtacgagtggtc
ttcaatgtgccgcaggaaccacagctggagcccttaatccagaatcagcataagtactgt
gtgaagtacagtcctgggtacgtcctggcatctcgtctcggcatcaccagctaccttgtc
tcccgcttctcaggaagcatcttcattggtagaggctctaagaggaatccctgtggagag
caaaaagctaacgttggcctgaacctcaagttcaacaagaagaatgaggaggttcctgga
tacaccaagagaactgaaaaggagtggctctactctgctgctgtggaggaactactggcc
gaatacctggacagattttctgaggtgttcaactcagtgtcaagaaacggtcacgatgat
gttttctatgaagatgacatttggcctgaagaggaccagaacggggcggagagggttgct
gaaatcacctcatggttgaaaagtcacccagtaagctccatcggcaggacttcctgtgac
ctacaggtgctggactctgccatcgttgagaggatcgaggaagcagtggagaaggccaag
gtgaagaagagcaccaagaaagtccgtgtgacagtcaagcctcatctcctcttcaggccc
ttggagcagcagcagggagtgattccagacccggattcagagtatcgcctgtttgacaga
gtcatcaacaccagggagggcttcactgtcccactgggactcagaggaactatcaccggc
attaaaggagcggatcgtgaggcagaggttctctatgaagtgctttttgatgaagaattt
gctggaggtctctgcatcaggtgtacttcacctcgttgttaccgcctccctccctgcgct
ctcattaacttgtcccacggaacacgagtggatcaaacctcccacaaactcaccgccatc
gtcaaacctcagcccaccacggccgcaaacttcaactctcagcgcgagttgtccggcctg
aatcactctccacgttcaccttttatacccacacagcataacaataagcatagtatgggg
aaggcagcctcccagggcaacaggaactctccctcaaaaggtcctatccagaaacaacag
tccaaggagtacaacaatgtgtggcagtctctgcagaactctggtcctcctctcaaccct
cctgctcactggcacaatgaaggactttcccaacagcggaagaaccagcactccaacgaa
gctgccccagttggtggcatcagattgttgaagaaaaatgaagatgccaattcccttttc
cccccacagaacacagccaataaggctacaactgagtttgaggacctgatcgccagtctc
aagatctccacgggtaaccagcagaccccgccccctccagctcctccgcaagcacccacc
agccagtcagatgggcctttgtcgccgcagtccttcgccatgaagggaaccctgatgctg
aaggagatgctgaagattgacggtgctggaacaggaagtccctcttctcaggagacagat
aacaccggtggccagcagcagaacaggagacgatcatccaagaaactagcagcaaatatg
aacgccccccacggtgatacagctgtaatggcttctcccgcattggccgtatctgctaac
ctctccaacgccgggctggccagtaaggtgtcagagctgacgcgtgtctgtgtggggcta
ggaatggcaccacccgatttcagctacataggcaacagacagggtcgcacagtagtgtgt
caggtgaagctgtccaatgggttgatggttcacggtccccagtgccaatcagaaaatgat
gccaaggaaaaagctgccttttttgccctccaaagactgaactcagtgggatctggcttc
cccctcccaccccctctatacccaggagtggggcagatacgacccccaccattaggagcc
atgggccctgtcttcagccagcaaggtggtttgttgttgcctcaccagggtttcggtcct
gcccctctatggggaatgccgctgccgcctccgcaccatcaaaaccagccgttctacgga
gcagcaggaaccttccctggtgccgcccggccccagcctgcaacaacagtgcccatcggc
tcacacaaccaatttattcctttacaggtgactaaaaagcgagtctcagccaacaagaag
aaccaggacactcgggagttttacagcgccgcccacgttgtgaccagaaacgaatcacaa
aaagcccacaaccagcacagccaatctctggctcagggtgaaccccagggcggtagagtt
gaccagccgcacccctatgccgccaacatcaacccctcctcgtccagtcctggtcaagta
gacggtgtctccaagacgaatgcagtcctgcacacaccccctcgacaaaacgtcccagcc
acaggccacnaccccggctcctccggcaagaggaagcacagaaagctggctgtcaacntt
gaggcagctaaagtttctgagtga
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integrated database retrieval system
