Etheostoma spectabile (orangethroat darter): 116698913
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Entry
116698913 CDS
T08457
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116698913 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116698913 (ndc1)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116698913 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
TPP_enzyme_C
Motif
Other DBs
NCBI-GeneID:
116698913
NCBI-ProteinID:
XP_032387039
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All DBs
Position
12:13600488..13609549
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AA seq
670 aa
AA seq
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MFSAEQSCWFVRKVVFWRAVASIAWAVLLLPPITAVFVIISRFSVLHPIQAVSECLSFLT
SASAIFSFILLCGVIIMVGFLNLEYYTVIPRIACSKIALFGQLLHPRQFVNSLAHCVMGI
IVAWCCAITIGGRYETIAYPCTQGDGSPQMCLNEYHLILLLAGAFVGFSHSLLGVIYNMN
YVSFHTVQQYKYLRFKGSLSLVLKCSATQALYSVRNYIVVYFFLGYVPKAWICKTLNLDL
NSSVHPLDSIAGLLDLSLLYHLWISGSFLLFTWHITLLLFRIFVTEVYSFPVQSSFTEDA
HQCLPKVLTDKQPKILQFLALQDLALLSQHSPSRRSEVFSLSQPGGHPHNWNAISKECLS
LLADLTQRLIAYHDTVATNGRAKSLSTGSERKTSSESSVTSGTEDLMSPRPTLLMKTPAS
VFARSIVGCPQSPLTAPFTPDLDSPFASPALRRLTAPMDQCSPWFGTVQSPHIMRRAPKL
WSTSTDSLVNGSPLASPATPVPSPKQEPSKPSLLAQFLQNRKEQVKNVLAKRVLIMYLFN
KLPEASSQALFADSQAHIWALEGLSYLVQSSFSEDQFGVVQTALPRILSCMLGLQEAVDR
HFKLPHASSKPVRSASSMGDSTHKTLRFALRATLKTSIYRITTTFGNHLNAVQMSAEHRK
RLQQFLEYKE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgttttctgcagagcaaagttgttggttcgtccgcaaggtggtattctggagagctgtg
gccagtattgcttgggctgtcctgttgttgccacccatcacagccgtttttgtaatcatc
agcaggttcagtgtgctccaccccatccaggcggtatcagaatgcctgtccttcttaacg
agtgcaagtgccatcttctccttcattctgctgtgtggggtgatcatcatggtaggtttc
ctgaacctggagtattatacagtcatcccaaggattgcatgctcaaaaattgccctgttt
ggtcagctactccaccctcgtcagtttgtcaactccctggcccactgtgtcatgggaata
atcgtggcttggtgttgtgccatcaccattgggggcagatatgagacaatcgcctaccct
tgcacacagggtgatggttccccccagatgtgcctgaatgagtatcacctcatccttctg
ctggctggagcctttgttggattctctcacagtctgctgggtgtgatctacaacatgaac
tatgtttcttttcacactgttcagcaatacaaataccttcgctttaagggatccctatct
ttggtgctgaagtgtagcgccactcaagcactttactcagtcaggaactacattgttgtg
tatttctttttgggatacgttccaaaagcatggatttgtaagacattgaatcttgatttg
aacagctctgtccaccctcttgacagcatagctgggctgctggacctgtccctactctac
cacctgtggatcagtggcagcttcctcctcttcacatggcacatcacactgctgctcttt
aggatctttgtcactgaggtgtacagttttcctgtgcagtcatcgtttactgaggatgcc
caccagtgtcttcctaaagttctgactgacaagcagccaaagatattacagtttctagct
ctgcaggacttggctttgctgtctcaacactccccatcaagacgcagtgaggtcttcagt
ctgagtcagccaggtggccatccccacaactggaatgccatcagtaaggagtgtctgtct
ttgctggcggatctcactcagagactcatagcctatcatgacaccgttgcaaccaatggg
agagccaaatcactgtctactgggagtgagaggaagacttcatctgagtcatcggttacc
tcgggtacagaggatctaatgagcccgaggcctactttactgatgaaaactccagcttcg
gtctttgcacgctccattgttggctgcccacagagccctctgacggcaccattcactcct
gacctggacagcccttttgcttctcccgccttgcggcgtcttactgctcctatggaccaa
tgctcgccgtggttcggcacagtgcagagcccacacatcatgaggagagccccaaagctc
tggtccacctccacagattcactggtcaatggcagtcccctggcttcccctgccacccct
gtccccagtcccaagcaggaaccgtccaaaccaagtctactggctcagttcctccagaac
agaaaagaacaggttaaaaatgtcttggcaaagcgcgtgctgattatgtatttgtttaac
aagcttccagaggcctccagtcaagctctgtttgcagacagccaggctcacatctgggct
ttagaagggctgtcttaccttgttcaatcctccttctcagaagaccagtttggggttgta
cagacagcattacccagaattctcagttgcatgctgggcttacaagaggcagtagatcgc
cacttcaagctgcctcacgcctccagtaagccagtcaggtcagccagcagcatgggagac
tctacccacaaaacactgcgcttcgctctcagggccactctcaagacttccatctacagg
ataacaactacttttggaaatcacttaaatgctgttcagatgtctgcagagcaccggaaa
agattgcagcagtttctggagtacaaggaataa
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