Etheostoma spectabile (orangethroat darter): 116699058
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Entry
116699058 CDS
T08457
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116699058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116699058
03009 Ribosome biogenesis [BR:
esp03009
]
116699058
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116699058
Spliceosome [BR:
esp03041
]
Complex A
U2 snRNP components
U2 related factors
116699058
Complex B
116699058
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116699058
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
90S particles
Helicases
116699058
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Cas3-like_C_2
EBNA2_Core
Flavi_DEAD
AAA_29
nSTAND3
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
116699058
NCBI-ProteinID:
XP_032387330
LinkDB
All DBs
Position
2:complement(12117993..12129386)
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AA seq
760 aa
AA seq
DB search
MSKRHRLDLGDDYSSTKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDLKPPSVPSNST
VPLTMPCLAPIKQMAMQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKENFSDIITRHQS
FVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQ
EVGYSIRFEDCSTAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGV
LKEVVRQRPDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAA
IRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQ
QQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVES
LLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLK
KLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMV
IASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFK
QNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYTNIRRALCT
GFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKP
EWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgcctggatttgggggatgattactcgtccactaagaagaggtct
gaagggagagacagggaccgggacagagaccgtgaggaccgctccagggacagggaccga
gatcgggaccgggaccgagacagagacctgaagccgcctagtgtcccgtctaacagcacg
gtgcccctgaccatgccgtgcttggcgcccatcaagcagatggctatgcaacagcagatc
aacccgttcaccaacctgccacacacgccacgcttctatgagatcctgaagaagcggtta
cagcttccagtgtgggagtacaaggaaaacttcagcgatatcatcacacgtcatcagagc
tttgtccttgttggtgaaactggctctgggaagacaacacagatcccacagtggtgtgtg
gatatggtgaggggcttgcctggccctaagcgggcggtagcctgtactcaacctaggaga
gtggcggctatgagcgtggctcaaagagtagcagacgaaatggacgtcatgcttggacag
gaagtcggctactccattcgatttgaggactgcagcactgctaagactatactcaagtac
atgacagatggtatgttactaagagaggctatgaatgacccgctgttggagcgatatggt
gtgatcattctggatgaagctcacgagcgaactctggccacagatatcctgatgggagta
cttaaggaggtggtgcgtcaaaggccggatctgaaggtcatcgtcatgagtgccacgctt
gatgctgggaagtttcaggtgtactttgacagttgtcctctcttgactattcctggacgt
acacaccctgtcgagattttctacacccctgaaccagagcgagactaccttgaggcagcg
atccgcactgtcatccagattcacatgtgtgaggaagatgaaggtgactgccttctcttt
ctcactggtcaagaggaaattgatgaggcctgcaagcggatcaagcgtgaggtagatgac
cttggacctgaagtcggagacatcaaaatcatcccactgtattctacgttgccaccacag
caacagcaaaggatctttgagccgcctcctccaaggaaaccaaatggtgcaataggaaga
aaggttgtggtttcgacaaacatcgctgagacctctcttacaattgatggtgtggtgttt
gtcatcgatcctggatttgccaagcaaaaggtttacaatccccgtatcagagttgagtct
ttgcttgtcacggccatcagtaaagcttcggcccagcagagggcaggcagagccggcaga
acacgtccagggaaatgtttccgcctttacacagagaaggcctacaaaacagagatgcag
gataacacataccctgagattcttcgatccaacttgggatctgtggtgctgcagctgaag
aagctgggtattgatgaccttgtgcactttgacttcatggatccaccagctcctgagaca
ctgatgagggcccttgagctactgaattacctggcagctctcaatgatgatggtgacctg
acagagctggggtccatgatggcagagtttcctttggacccccagctggctaagatggtc
attgccagctgcgagtttaactgctctaacgagatcctctccattactgccatgctgtca
gtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtccaagatg
aggtttgctcacatcgacggagaccacttgacgctgctcaacgtctaccacgccttcaaa
caaaaccacgaggctaaccagtggtgctatgacaactttgtcaactaccgttcactgatg
tctgctgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctgccccgt
cggagcactgagttcaccagcagagattactacaccaacatccgccgagcactctgcacc
ggcttcttcatgcaggtggctcatctggagcgtacagggcattacctcacagtcaaagac
aaccaagtggtccaactgcacccatctacagtcctggaccacaagcctgagtgggtgctc
tacaatgaatttgtcctcaccaccaaaaactacatccgcacgtgcacggacatcaaacca
gagtggctggtgaagattgcaccccagtactatgaaatggggaacttcccacaatgtgaa
gctaaacgacagctggagagaatcattgccaaactagagagcaaggagtattcccaatac
tga
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