Etheostoma spectabile (orangethroat darter): 116699213
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Entry
116699213 CDS
T08457
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116699213 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116699213 (prpf38b)
Spliceosome [BR:
esp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116699213 (prpf38b)
Complex C
U4/U6.U5 tri-SnRNP related factors
116699213 (prpf38b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
116699213
NCBI-ProteinID:
XP_032387591
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All DBs
Position
12:3879491..3885412
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AA seq
462 aa
AA seq
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MANVGNQLPTQAVSKPAPGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTY
HEVVDEIYFKVTHAEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTR
KQLMGLITHTDSPYIRALGFMYIRYTQPPADLVEWYDGFLDDEEELDVKAGGGCVMTIGE
MLRSFLTKLEWFSTLFPRIPVPVQKIIDQQMKARPRKVAPKETQEEEEAAVAEAGGQGER
RHSRTPRRTPSPRRSPKRSRSRSHHREKERHGPSFDRELERERDRQKKERDGRDRDRGDR
ERRRSRSADRNQDRRERRRSRSGSRERRNERKDKERDGGEDKSRRKDREHHKDRGAEGER
SKDKKTRGETDDRRHKDDRERHREERKAKRLSRSRSRDRKHRSGGEEKVRKVEGSHSRDR
DRERDGEQRSHKSSGSKERSHHQRESSNDHCKQSEGRSRSTE
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggctaacgtcggaaaccagctaccaacacaggccgttagcaagcctgcaccaggaaaa
catggaaatgtattgcccctgtggggcaacgaaaagacaatgaacctcaacccaatgatt
cttacgaatgtgctgtcttcgccgtatttcaaagttcagctttatgaactaaagacctac
catgaagttgtggacgaaatctacttcaaggtgactcacgctgagccttgggaaaaagga
agcagaaagacagcaggccagactggaatgtgcggaggggtgcgtggagttgggaccggt
ggtattgtgtccactgctttctgtcttctatacaaactgtttactctcaagctgactcgc
aaacagctgatgggtctgatcactcacacagactcgccatacatcagagcacttggcttc
atgtacataagatacactcagcccccagcagacttggtagaatggtacgatggcttcctg
gatgatgaggaggagctggacgtgaaggccggggggggctgcgtgatgaccattggagag
atgctgcgctccttcctgaccaagctggagtggttctccaccctgttcccccgtatcccc
gtgcccgtgcagaagatcattgaccagcagatgaaggccaggcctcgtaaggtcgctcca
aaggaaacgcaggaggaggaggaagctgccgtggcagaggcgggggggcaaggggaaaga
cgccactccaggacacccaggcggacaccgagcccccgaaggtcacccaagcggtcgcgg
agcagaagccaccaccgcgagaaagagcgccacggccccagcttcgaccgcgagctggag
agagagcgcgaccgccagaagaaggagagggacggcagggaccgggaccgaggggacagg
gagagacggcggtcccgcagtgcagacaggaaccaagaccggcgagaacgtagaagaagt
cgcagtggcagccgggaacgaaggaacgaacgcaaggacaaagaaagggacggcggggag
gacaagagcaggaggaaggacagggaacaccacaaagatagaggggctgagggggagagg
tccaaggataaaaagaccaggggagagactgacgacaggaggcacaaagacgacagggag
aggcacagagaagagaggaaggccaaaaggttgagccggagtcgaagcagggacaggaag
caccgtagcgggggggaggagaaggtcaggaaagtagagggcagccacagcagagataga
gacagggagcgagacggagaacagcgttctcacaaaagtagtggtagcaaagagaggagc
catcatcagcgagagtccagtaacgaccattgtaaacaaagtgaaggcaggagtcggagc
actgagtaa
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