Etheostoma spectabile (orangethroat darter): 116699273
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Entry
116699273 CDS
T08457
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04382
Cornified envelope formation
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116699273
04518 Integrin signaling
116699273
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116699273
09142 Cell motility
04820 Cytoskeleton in muscle cells
116699273
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116699273
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116699273
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116699273
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116699273
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116699273
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116699273
NCBI-ProteinID:
XP_032387672
LinkDB
All DBs
Position
12:complement(6613297..6638029)
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AA seq
1668 aa
AA seq
DB search
MGSSVTVVTLWPLRWILVLVIFVQQLKAGRNESPCQGRDCSVCQCLPAKGARGAPGKPGQ
QGPRGPMGPWGREGSPGEKGMRGAEGSHGPEGTKGDRGKIGVPGFSGNDGSPGHPGAGGE
PGLPGVDGCNGTRGRPGVFGIDGLDGLHGPQGLRGPKGVKGEPLYVATYPGLPGERGRDG
QRGRPGRKGDIGPKGHTGPLGPLGLEGLKGQKGVRGLPGDPGGSLPGAEGDDGEQGPPGP
QGPEEVIELPLEILPPKGYKGDQGLPGSCGPKGISGGRGDVFIQGIKGEQGIPGFPGVRG
FPGFPGRDGPPGPEGLPGERGFPGLIGKTGPKGYPGEPGLPGPLLFQNGSDARGVKGDRG
IPGQPGPAGDPGYMGIPGPPGPPGLTVPEEPGLPGPQGSPGLKGYKGEPVGQDYVENLFP
GTKGTKGLIGPKGVQGLPGPPGCGDYYCEPGDSGDPGDKGSIGPPGNRGFKGIKGCQGDC
NCRAGDGSEGPPGPPGYPGSPGLPGTQGLKGDPGLKGSDGLRGPQGFEGVLGLKGHKGQK
GDTVFEGSKGAKGNQGDPGPSGPPGSTGRPGLNGRPGLAGDPGPPGAGYAGLPGPKGYPG
VAGPKGFSGLIGPPGPGYPGAKGLPGPHGHQGGPGSLGIPGRPGPPGETEPCCHDDAIGL
PGRKGEPGLPGISGEPGRDGPPGSPGPPGPKGLKGDGGGTGVLGLPGPPGFNGDPGEPGP
RGVSLDGPPGPPGLPGHQGKKGAPGDVTFARPGATGPPGPLGARGTKGLRGIHGKPGSPG
AEGQSGQPGWKGEPGTNGDPGATGPPGPPCTVCDLIGLPGLPGPPGNPGHRGVPGYPGQK
GLKGDVGQPGHGERGPQGFWPPGLPGPAGPRGLTGPSGDPGSDGWPGLKGERGFPGRPGA
TSLPGRPGPPGPPGKQGERGFFGHPGDTGYPGQPGMKGERGPPGPPHFEHVKKGPPGPPG
EMGQPGLQGPEGSKGPRGVPGASGSNGWPGLPGSKGSTGAPGRPGLPGPPGYPGNKGFPG
PRGYPGHDGDWGDPGRWGESGIPGLPGLPGTKGEPGESYGQPGPPGPKGLPGEDGHSVQG
SPGDRGDPGPQGRSGQPGQPGIVGEPGRRGGPGYPGPRGPSGQPGLPGPPGDHGGLGPPG
PLGPNGPLGPPGAPGLDGLDGLRGPKGIKGASGIGIPGPPGPDGFPGAKGFKGQQGPLGA
MYLGPKGQRGPPGVTGFPGCPGDPGNPGRDCHRPLPGLYGDVGYEGPPGPPGPPGEPGLP
GSSIFSKGDPGPVGSPGVPGFKGDQGLPGPAGSHGYPGLRGPKGERGPVGPGGFPGPKGQ
TGVPGPRGRKGITGRPGDAGVKGAPGDIIGGDPRMAPAGLPGPRGLPGAVGFPGDTGPPG
TPGRKGQKGLRGNVGLPGKPGPPGHNGPVGDPGDVGQLGFTGPQGVPGPSGERGLPGQRG
KLRSGFLLVIHSQSVQVPQCPEDSSQLWMGYSLVYLEGQEKAHTQDLGQAGSCLPVFSSM
PFSYCNTAACHYSSRNDKSYWLSTTAPIPMMPLSGQEISSHISRCVVCETVSPAVAFHSQ
DPTIPACPPGWRSLWTGYSFLMQTGSGDEGGGQSLTSSGSCLKDFRTHPFIECQGARGSC
HYFANLYSFWLTTVGQTEQFVTQRPVTIKAANLQRHKTSQCHVCLREH
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgggctcctcagttactgttgtaactctgtggcccctcaggtggatccttgtcctggtc
atctttgtgcagcagctcaaagcagggaggaatgagagcccatgtcaaggcagagactgc
tctgtatgtcagtgtcttcccgctaaaggtgcacggggagctccaggaaagccaggccaa
caaggcccccggggaccaatgggaccatggggacgtgaagggtcacctggagagaaaggg
atgaggggagcagaaggatcacatggtccagaggggaccaaaggagaccgtggcaagatt
ggtgttcctggtttttccggtaatgatggctcaccaggccaccctggagcaggcggtgag
cctggtttgccaggagtggatggctgcaatgggacaaggggtcgaccaggtgtatttggt
attgatggtttggatggactccatgggccacagggattacgtggacctaaaggagttaaa
ggagaacctttgtatgttgctacatatccagggcttccaggggagcgtggtcgggatgga
caacggggtcgacctggaagaaaaggtgacattgggcctaaaggccacactggccctctt
ggccctcttggacttgagggcttgaaaggacaaaaaggtgtgagaggactaccaggcgac
cctggaggatcactgccaggagctgaaggtgacgatggtgagcaaggtccacctggccca
caaggaccagaagaagtcatagaattgcctctagaaattcttccgcccaaaggttataag
ggagaccaggggcttcctggatcatgtggaccgaagggcatcagtggtggtaggggagat
gtcttcatccaaggaattaaaggagaacaaggtatccctggttttcctggagttaggggt
tttccagggtttcctggtagagatggaccaccaggacctgagggtttgccgggagagaga
ggatttccaggtctcattggaaaaacgggaccaaagggttacccaggagagccaggtctc
cccggtcccctgctctttcaaaatggaagtgatgccagaggtgttaaaggggaccgtggg
attcccggacagcctggacccgcaggtgaccctgggtacatgggcatacctggcccacct
ggcccaccagggttaaccgtaccagaagagcctggtctgcctgggccacaagggtccccc
ggtctcaagggatacaagggagagccggtaggccaagactatgttgaaaatctgtttccg
ggaacaaagggaaccaaaggactcatcggacctaaaggtgtccaaggcctcccaggtcct
ccaggatgtggagattactactgtgagcccggagactcaggggaccctggggacaaagga
agcataggaccgcctggaaaccgagggtttaaagggattaaaggttgtcaaggggattgt
aactgtagggctggtgatggaagcgaagggccccctggtccacctggttatccaggatct
cctgggttacctggaactcaaggtcttaaaggagacccaggactgaaaggaagtgatggt
ctaagaggcccacaaggctttgaaggagttctgggtttgaaaggtcacaagggtcaaaaa
ggtgacactgtttttgaaggtagtaaaggtgccaagggcaaccaaggagaccctggacct
tctggtcctcctggatcaactggtaggccaggtttgaatggacgccctggccttgcaggg
gaccctggaccaccaggtgctggatatgcaggcttacctggtcccaaaggttaccctggt
gttgctggacccaaagggttttcagggcttattggccccccaggtcccggctatccaggc
gctaaggggctacctggacctcatggtcatcagggaggtcctggctccttaggaattcct
ggacgaccaggccctccaggtgaaactgagccatgctgtcatgatgatgcgattggatta
cctggtcgtaagggtgagccaggtttaccgggaatttcaggcgagccaggaagagatggt
cctccaggaagtccgggacccccaggcccaaaaggcttgaaaggagatggcggtggaact
ggagtgcttggactgccaggacctccaggttttaatggggatccaggtgagcctggtccc
aggggtgtcagtctggatggccctccaggccctcctgggttaccaggacaccaaggcaag
aagggtgccccaggagatgtcacctttgccaggccaggtgctactggcccacctggtcca
cttggggctagggggactaaaggactccgtggcattcatggaaagccaggttctccaggt
gcagaaggccaatctggacaacctggttggaaaggagagccaggaaccaacggtgacccg
ggggccactggtcccccaggcccaccctgcactgtgtgtgacctgattggactcccaggc
cttccaggccctccaggaaaccccggacacaggggagtaccaggctaccctggtcaaaag
ggtcttaagggagatgtaggacaacctggtcatggagaaaggggtccacaaggtttctgg
ccccccgggttgccaggcccagctggaccaagaggcctcacaggcccatcaggagatcct
ggctccgatggctggcctggactgaaaggtgaaagggggttcccaggcaggcctggggcc
acaagtttaccgggtcgccctggacctccaggacctccaggaaaacagggagagagaggc
ttttttggtcacccaggtgacactggatacccaggacagcccgggatgaaaggtgaacgt
ggtccaccaggaccaccacattttgagcatgtaaaaaaaggcccaccaggacctccagga
gagatgggtcaaccaggactacaaggacctgaaggctcaaagggcccaaggggagtgcct
ggtgcttcagggtctaatggatggcctggtttgccagggtctaaaggcagcactggtgct
ccaggcagaccaggattaccaggacctcctgggtaccctggaaacaaaggttttccaggt
cccaggggatatccgggacatgatggagattggggagatccagggcgttggggagaatcg
ggtatcccagggttaccgggacttccaggaaccaagggtgagccaggagagtcttatgga
caacctggtccacctggacccaaaggactgccaggggaggacggacacagtgtgcaaggg
agtccaggagatcgaggggacccaggaccccagggaaggtcaggtcagcctggacaacca
ggcattgtcggggaaccaggaagacgaggaggaccaggctaccctgggcctcggggccca
tcaggccagccaggtcttccaggtcctccaggcgatcatggaggtctgggaccaccaggc
ccccttggtccaaatgggcctttagggccccctggtgcaccaggtctggatggactggat
gggcttagaggtccaaaggggatcaaaggagcaagtggcataggcattcctggccctcca
ggaccagatggttttcctggagccaaaggttttaaaggccagcaaggacctctaggagcc
atgtatcttgggcccaaaggccagaggggcccacctggcgttacaggttttccaggctgc
ccaggtgaccctggtaaccctggcagagactgccacaggcctttgccaggactctatgga
gatgtaggatatgaaggacctccaggacctccaggtcctcctggagagccgggccttcca
ggcagcagcattttctccaaaggagacccaggtccagttggctcccctggggtaccaggt
tttaagggggatcagggccttccagggcccgctggctctcatggctacccaggcttaaga
ggaccaaaaggcgagagaggtcctgttggtcctggaggttttccaggacccaaaggacag
actggggtacctggacccagggggcgcaagggaataactggtcgacctggagacgcaggt
gtcaaaggtgctcccggggatatcatcgggggagatccaagaatggcccccgctggacta
cctggaccacgtggtctcccaggagcagtggggtttcctggcgatactggtcctcctggg
actccaggacgtaaaggacagaagggtctcagaggcaatgtgggactacctggcaaacca
ggtcctcctggtcataacggtcctgttggagacccaggagatgttggtcagctaggattt
actggacctcaaggtgtcccaggtccatccggtgaaagaggtttgccaggccagaggggg
aagttaagatccggcttcctcttggttatccacagccagtcagttcaggtgccacagtgc
cctgaagacagcagtcaactttggatgggatacagtctggtctacttggagggacaagag
aaagctcacactcaagacctgggccaggctggctcctgcctccctgtattctcctccatg
cctttctcctactgcaacaccgctgcctgtcactactctagtcgcaacgacaaatcctat
tggctgtccaccaccgctcccatacccatgatgccgctttcgggccaggagattagctcc
cacatcagccgctgcgtggtgtgtgagacagtctcacctgcagtggcttttcacagccag
gatcccacaatccctgcatgcccacctggctggaggagcctgtggacggggtactctttc
ctcatgcaaacagggtcaggtgatgagggtggtggccagtctctgacgtcttctggtagc
tgccttaaggatttccgaactcaccccttcatcgagtgccagggtgcgcgcggttcctgt
cactactttgccaacctctacagtttttggctgaccacggttggtcagacagagcagttt
gtcacccagaggcctgtcaccatcaaggcagccaacctacagcgacacaagaccagtcag
tgccatgtctgcctcagagaacactaa
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integrated database retrieval system
