Etheostoma spectabile (orangethroat darter): 116699283
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Entry
116699283 CDS
T08457
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04382
Cornified envelope formation
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116699283
04518 Integrin signaling
116699283
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116699283
09142 Cell motility
04820 Cytoskeleton in muscle cells
116699283
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
116699283
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
esp04147
]
116699283
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116699283
Exosome [BR:
esp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
116699283
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116699283
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
116699283
NCBI-ProteinID:
XP_032387680
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All DBs
Position
12:6652893..6672255
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AA seq
1348 aa
AA seq
DB search
MIPPLWLCLQISGHLTESLKGYPGDPGFPGFPGLPGHQGVDGFPGPYGPPGPSVIYVPGP
PGPKGYPGPKGDPGEPGGIFRGPPGLDGDYGDQGPPGDPGPPGPPEDRTSRTTKGLPGRK
GMKGVPGPTGYDGVYGMKGEKGEPCMXCIGSASPGPPGPRGLPGIPGYNQGPGAKGDPGF
PGPSGLPGRPGPTGEMGFRGLPGQKGESYSNNSPGIKGEKGDPGQPGRPGADALPGFPGQ
PGRKGNQGPPGDSYPFSGEEGDRGFPGPPGPSGRPGPPGYPGPVGYGPPGIPGRMGNVGV
PGLPGLPGIPGQKGEPSHIHAKGHPGPPGFPGLPGSPGRPGNHGALGTPGVTGVRGQKGE
KGEVSRPGRPGIPGQKGDKGQPGVPGLSVRGLPGRPGSQGLPGPAGQKGDSGPGYPGFPG
LPGSPGEDGEQGPVGDPGIPGLPGNPGLNGNPGYPGEKGNKGSVGLPGPPGNKDLCEGSL
PGPRGEPGPDGYPGHPGPNSSPGEKGIPGLPGFGRPGIPGEPGIPGPSVAGPPGLTGPKG
IKGQNGLPGQPGLRGDPGLDGLPGYGRDGLPGIIGPPGQIGAPGPDGARGPRGPPGMKGE
PGFRGPPGPSAQPLDLVGPPGEPGNPGYPGLSGARGDTGSAGPKGQRGIDGAPGSPXQPG
PQGDPGVSGLTEGSRGPAGAPGDPGVRGPPGPTGTKGDRGISGGPGRNGESGPTGNKGVK
GDPNYYGYGLPGPVGQKGEPGSPGTNARKGQKGEAGSFGVLGLPGSLGAKGNQGSVGQNG
LPGYQGLQGSDGPPGSKGQQGPNGRPGDPGLPGVRGYPGPKGNQGRDGIPGSPGQKGDTN
IIRGTPGGRGETGQQGPPGNPGPPGLPGTGSPGPIGDRGFPGSPGTCGPNGLPGTDGACV
PGLKGDHGRPGTPGSPGYPGPPGRPGPPVPGLKGDRGDPGLTGGRGYSGPCGDPGPQGPP
GPRGRPGGLGPRGDPGPPGVHGPPGGKGEPGYIPGPPGPPGIKGFLGRPGSKGQPTMAQV
IYEPGSPGSPGPLGNRGAPGSTGPSGPVGQPGQPGVKGQPGVASPDGQPGFTGRKGDKGR
AGLPGPVGRIGDPGNKGPQGLPGRGCPGYIDSFLIARHSQSTRVPDCPHGSSLIYSGYSF
LFINGNERAHGQDLGTMGSCLPHFSTMPFLFCDTESNCRYASRNDYSYWLSTDTPMPANM
VSITGERLASYISRCSVCETTSNVIAVHSQTTLIPACPRGWESLWTGHSFFMQLGAGAEG
SSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPDSYSYWLASLDPNRMFSKPVPQTVKGP
SIQSVISRCRVCRKLWQPDTDEKRGDNF
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgattccaccactgtggttatgtctacagatatctgggcatttgactgaatcactcaaa
ggataccccggagatcccggtttcccaggcttccctggactgcctgggcatcaaggtgtt
gacggatttcctggaccttatggacctccaggtccgtctgtgatttatgtgcctggccca
cctggtcccaaaggttatccaggccccaaaggggaccctggggaacctgggggtattttt
cgaggacccccaggtctagatggggattatggtgatcaagggcctcccggagatcctggc
ccacctggacctcctgaagacagaactagcaggactaccaaaggtctcccaggaaggaag
ggaatgaagggtgtgcctggacctacgggatatgatggggtgtatggaatgaaaggagag
aagggggagccctgtatgnagtgtatcggatcagcatccccaggaccaccgggtccccgt
ggcctacctggcattccaggatataatcagggacccggtgcaaaaggtgatccaggcttc
ccaggacctagtggcttacctggaagaccaggtcctactggtgaaatgggatttcgaggg
cttccaggacaaaaaggagaatcatattccaacaacagtcctgggataaaaggagagaaa
ggtgaccctggacagcctggcaggcctggtgcagatgccctccctgggtttcctggacaa
ccaggtcgcaaaggcaatcaagggcctccaggggattcgtatcccttctctggggaagag
ggagaccgtggtttcccaggtccacccgggccctcaggcagaccaggaccacctggctac
cctggaccagtgggatacgggcctcctggaattccaggaagaatgggcaatgttggggta
cctggcctgccagggctgcctggaattccaggccagaaaggcgaaccaagccacatccac
gccaaaggacatcctggaccacctggatttccaggtctgcctggttcacctggacgccca
ggtaatcacggagcactgggtaccccaggagtaacaggtgttcgaggacagaaaggcgaa
aagggggaggtgtcacgtcctggaaggccggggatcccaggacagaaaggtgacaagggg
cagccaggtgtcccaggcctttcagttaggggcttgcctggtcggccaggttcacaaggc
cttcctggtcctgcaggacaaaagggtgatagtggccctggataccctggcttcccagga
ctcccagggtctccaggagaagacggagaacagggtcctgtgggagatcctgggatccct
ggcctacctgggaacccaggactaaatggcaatcctggttatccaggagaaaagggaaat
aaaggttctgtagggcttccgggaccacctggtaataaggatttatgtgaaggtagttta
cctggacctaggggagaaccaggaccagatggttatccaggacatccaggacctaatagc
tcccccggtgagaaggggatcccaggtttgccagggtttggtcgccctggcatccccggt
gaacctggtatccccggcccatcagtggcaggtccacctggccttactggaccaaaaggg
atcaagggacaaaacggcctgcctggtcaaccaggactaagaggagatcctggactagac
gggttaccaggatacggaagagatgggttgcctggaattataggaccaccaggccaaata
ggtgcccctggcccagatggagccagaggtccccggggtccaccaggcatgaagggtgaa
ccaggtttcagaggtcctccaggcccctcagcacaaccattagacttagtcgggccccca
ggggagcctggcaatccaggttaccctggtttgtctggtgcccgtggagatactggaagt
gctgggccaaaagggcagagagggatagatggagcaccagggagtccctgacaaccaggt
ccccaaggtgatccaggtgttagtggactcacagaaggaagtcgaggacctgctggagct
ccaggggacccaggagtcagggggcctccagggccaacgggaacaaaaggagatcgagga
atctctggagggccaggtcgcaatggagaatcagggccaactggtaacaaaggagttaag
ggagatccaaactactatggatatggactgcctggaccagtaggacaaaagggtgaacca
ggatcacccggtactaatgcgaggaagggtcagaaaggtgaagctggttcttttggagtt
ctgggtttaccaggaagccttggagcaaaaggaaaccaagggtctgttggacaaaatggt
ttaccaggctatcaagggcttcaaggttcagatgggcctccaggaagcaaaggacagcaa
ggacccaacggacggccaggtgacccaggcctgccgggtgtcaggggttatcccggtcct
aaaggcaatcagggccgggatgggattcctggctctccagggcagaaaggagacactaac
atcatacgagggacgcctggtggccgtggtgaaacaggtcaacaaggtccccccgggaac
cctggtccccctggcttgcctggtactgggagtcctggaccaataggtgacagaggattt
ccaggttcacctgggacctgtggtccgaatggactgccaggaaccgacggggcttgtgtt
cctggattaaaaggagaccacggtcgtcctggcactcctggtagcccaggctatcctggc
ccacctggccgtccaggtcccccagtgcctgggttaaaaggagacagaggggacccaggt
cttacaggaggcagaggctatagtggaccctgtggagatccgggccctcaaggaccacct
ggtccaagaggtagacctggaggcctaggaccaagaggtgatcctggtcctcctggagtc
catgggccccctggtggcaagggagaacccggatacatcccaggtccaccgggtccacct
gggatcaaaggttttctcggacgaccaggctccaaaggtcaaccaacaatggcccaggtg
atatatgaaccaggttctcctggctcacctggtccccttggcaatcgaggagccccaggg
agcactggaccatcaggaccagtaggccaaccaggtcagccaggcgtcaaaggacagcct
ggtgttgccagcccagatggccagcccggatttactggccgcaaaggagacaaaggaaga
gcaggactgccaggtccagtaggcagaattggagacccaggcaacaaaggtcctcaaggg
ttgccaggccgaggttgtccaggttatattgacagtttcctaatagctagacacagtcag
agcacccgtgtccctgactgtcctcatggcagcagcctcatctactctggttactccttc
ctcttcatcaacggaaatgagagagctcacggtcaggaccttggcaccatgggaagctgt
ctccctcatttctccaccatgcccttcctgttctgtgacaccgaaagtaactgccgctat
gcatctcgtaacgactactcctactggttgtccactgacactcctatgcctgcaaatatg
gtttccatcacaggggaaaggctggcttcctacatcagcaggtgctcagtatgtgaaacc
acctccaatgtcatagccgtccacagccagacaactctgattcctgcctgtccccgaggt
tgggagtcactatggaccggacactcatttttcatgcaattgggtgctggagcagaaggg
tcctcccagcccttggtttctcctggctcatgtctggaaagtttccgccaagtgcctttc
atcgagtgtcacggcaggggaacgtgtaactactaccctgattcctatagctactggctg
gcctccctagaccccaaccgcatgttcagtaaacccgttcctcagacagtgaagggacct
tcgatacaaagtgtcatcagccgttgtcgtgtctgcaggaaactatggcaacctgataca
gatgagaaacgtggggacaatttttaa
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