KEGG   Etheostoma spectabile (orangethroat darter): 116699335
Entry
116699335         CDS       T08457                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
esp  Etheostoma spectabile (orangethroat darter)
Pathway
esp04115  p53 signaling pathway
esp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:esp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    116699335
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    116699335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:esp04121]
    116699335
Enzymes [BR:esp01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     116699335
Ubiquitin system [BR:esp04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    116699335
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     116699335
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_DCAF4 zf-C3HC4_2 Beta-prop_WDR90_POC16_2nd WD40_RFWD3 zf-RING_UBOX Beta-prop_WDR35_TULP_N Beta-prop_Vps41 WD40_like zf-C3HC4 Beta-prop_IFT140_1st Beta-prop_DCAF12 RING_XB3-XBAT31 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st zf-RING_5 Beta-prop_IFT122_2nd zf-C3HC4_4 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 116699335
NCBI-ProteinID: XP_032387757
LinkDB
Position
12:complement(19692067..19708771)
AA seq 624 aa
MMSNNRQQQSPGGASSVPSTSSSSTGGTGNTNGSVGSNVVTSNLNGNNSGNVVPSRTLAA
ASEGVLSVPTLAAVPSSRGGFASLSRPSGSSGSRKKSLHQAPLYNGLLNSYEDKSNDFVC
PICFEMIEEAHMTKCGHSFCEKPPELEDRNGAPRAVHMIMKSLNCQLATTGPTHHSLRGK
TCYFCVLFQEMSGLYCPMMELECTVPNVEAPSPAPSSIIDPPDYSHPPGFGGTTQAKRQT
WYNSTLASRRKRLTAHFEDLEQCYFSNKMSRITDEGRNLNQLDDFMECLSKFTRYNSVRP
LATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVIQDAVDIHYPVNEM
TCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPK
LLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPTSRYHLAFGCADHCVHYYDLRN
TKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLRSFKGHINEKNFVG
LASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDKKEDDTNEFVSAVCWRA
MPDGESNVLIAANSQGTIKVLELV
NT seq 1875 nt   +upstreamnt  +downstreamnt
atgatgtcaaacaaccggcaacagcaaagccctggtggggcaagttccgtgcccagcacg
agtagcagcagcacaggaggcactgggaacacaaacggtagcgtcgggagcaacgtcgtc
acaagtaaccttaatggtaacaattctggaaatgttgtgccctcccggaccttggcagca
gccagcgagggcgtcttgtcggtgccaacgttagccgccgtaccctcgtcccggggcggg
tttgcttctctgagcagaccctctgggtcttcaggcagcagaaagaagtccctccatcaa
gcacctctttacaacggcctcttgaattcatacgaagataaaagcaacgattttgtgtgt
cccatttgcttcgagatgatagaagaagcacacatgacaaagtgtgggcacagtttttgt
gaaaaaccgccagagttggaggacagaaacggtgccccaagagctgtacacatgattatg
aaatcattaaattgtcaattggctacaactggacccacacatcacagcttgaggggcaaa
acatgttatttctgtgtacttttccaggaaatgagcgggctgtactgtccaatgatggag
ttagagtgtacagtgcctaacgttgaggctccctcaccagcacccagtagtattattgac
ccaccagactacagccaccctccaggattcggtggaactacccaggccaaaagacagacc
tggtacaacagcaccctggcatcaaggaggaagaggcttacggctcactttgaagatctg
gagcagtgctacttctccaacaaaatgtcccgcatcacagatgaaggcaggaacctgaac
cagctggatgattttatggagtgtctgtctaagtttacccgctacaactctgtgcggccg
ctcgccactctctcctacgccagtgacctctataatggctccagtattgtctccagtatt
gagttcgaccgtgactgtgactactttgccatcgccggtgtgaccaaaaagatcaaggtg
tttgagtatggcacagtgatccaggatgcagtggacatccactaccctgtcaatgaaatg
acttgcaattccaaaatcagctgtatcagctggagtagctatcacaaaaaccttctggcc
agcagtgactatgagggtactgtcattctgtgggatggattcaccggccagaggtccaaa
gtctaccaggaacatgaaaaaaggtgttggagtgttgactttaacctgatggaccccaag
ctgttagcctccggttctgatgacgctaaagtgaagttatggtcaaccaatcttgacaac
tcagtagccagcattgaggccaaggccaatgtctgctgtgtgaaattcagtccaacctca
aggtatcatctggcctttggctgtgcagatcactgtgtccactattatgatctacgcaac
actaagcagccaatcatggtattcaaaggccacaggaaggctgtgtcttacgcaaagttt
gtcaacggagaggaaattgtttctgcttcgacagacagtcagctgaagctgtggaatgta
aacaagcctcactgtctgcgctcctttaagggtcacatcaacgagaagaactttgtaggc
ctggcctccaatggagactatgttgcctgtggcagtgaaaacaactccctgtacctatac
tacaaaggactttccaagacgctgttgacatttaagtttgacaccgttaagagtgtgctg
gacaaagacaagaaggaggacgacaccaatgagtttgtcagcgccgtctgctggagagcc
atgccggatggagagtcaaatgtactgatcgctgcaaacagccaaggaacgatcaaggtc
cttgagcttgtctga

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