Etheostoma spectabile (orangethroat darter): 116699996
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Entry
116699996 CDS
T08457
Symbol
ltn1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
esp03009
]
116699996 (ltn1)
04121 Ubiquitin system [BR:
esp04121
]
116699996 (ltn1)
Enzymes [BR:
esp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116699996 (ltn1)
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
116699996 (ltn1)
Ubiquitin system [BR:
esp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116699996 (ltn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
zf-ANAPC11
FANCL_C
RINGv
zf-rbx1
zf-RING-like
zf-RING_16
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
116699996
NCBI-ProteinID:
XP_032388661
LinkDB
All DBs
Position
13:complement(24006696..24022815)
Genome browser
AA seq
1759 aa
AA seq
DB search
MGGKNKQRTKGNVRPSSSGRAAEVLTREGGIIPGFVGFDTTVTSELSYVPAVHGAEEIDN
LVDADFRLVLRKLSKRDAVTRLKAVQDFGFMCQERDSEEVKGVLPYWPRIYCKISMDHDR
RIREATQQALEQLVLKVRRSLAPFLKSLMGHWILSQCDTYTPAASAACQAFQAAFSPTKQ
PEALSFCKDEILNVLQDILLKETADTLSDPQSVTEDEREGKYVRMLTSSLLGVKRLLSLL
VQRDRTAMEERLAHLLNSGKFWKYSKHKTPQVRGAFFEMVCALFEFTPGLVQTEAARLST
TVLLSIDDTDPVVLPPVWEAVLHVVSTIHDCWTHVNAKKGFLPKLWVLLKEGGKGMAKAL
HPNLMPLISKLPQQVTEPTLDFYTTFFSSFIQGLSSERAATSPSESAVIVTSVVECLRYC
ILHNTEEEEQKKIQTMLISQQLLPLLEKALGNPSLQNGPLFLSVTEMLVSWERRAGLHSE
DEANGSSHVFQELLADFWDGLGLLFVRYADNEDADPQALEGVATLLQVMRYPERVKGKLL
QNKKSVKICFSEPEDNDKTGVEKPVQTVSELVNEKPFGSLHTQHFEDVVCQLAQLCLVHV
TEKNSERHLVFLSLLLQSFHTPRVFSTLVELDDKKMDREQRDEVIMKNPAMQFLLERVVV
WLAEKGRRDTEHLVEMVFSSLYGCSHQETTRILNHITTMDLQWGIILQIVQRVCADPETL
KSCRDWLKGSVLGEQLLGLTEELCKVGCSTPNFTSSTSNHSWTLISLVLSRHHNNESLIG
EVYMEKILERLHATLSETKSLSDAGNMEPLICFICDVASTFFSSVQDCLLLLSAEELLLT
VFQLTAQDQTLTHLSDSLLDKLRQVCVAGVQSLVQHSEYEVKEGGFLHSAALWVTNQLLT
VSLDIKSLQILILAVENLVETIISVCDQDSSLLIQFFTQLTPSQTEWTRIRQALPPQWIK
SPLLSCRHRGVCEKRSMDIWKFRLSTRLPAHLCACALLGRVAQTAAFIPRDKKNAECPSL
FANLKHTVSELLYALQWCREIEYIPANLSLLTDLGLAEGLQTQVQMKDLLGTLYSRSVED
GGLWSLTLENYIHTNNLANTHSATLRELYGSSDSLFPVSQSKLSTLQVLCPTMSQKDRET
LVALATAGIINWQENDDVYGCLAVLLCCLKANTQVEEEVVQAIVATVMEWRNSKEDWFLF
SSDLSKATAEQLNIAVEMMRFLSWLVTHFPTVLGSSQWDFLLCSMLAWLETATENVSSLW
NPWVQLFVCENTALIVKLNQFFTSSSPDVLEKLPSELIAEWTDFFVEGIYNLLFPLTINI
TDAFTDPDDPVFPLAVLQSVGVALTYVPVQLLKQNSLPPRFIADQKTNLPEPLQTLLNTF
CPLLLFKARPLQITVYHLLEKVMPQLPECDGEGDTNKSDDDRDEPCLSPPASLMAILSTC
EDLCDSILAGVQVGEFAVVQPLSVEYSCILAYLLAWKLLLIFFKSSPSHLRAHYAQYLKR
SCSLNKLLLDLFKLMPENPIYPGQGPETKEAKTFFTESQSLAVDNSKSVEWELPHLACSV
YYSTVQDLPAMVRLWWNGQEKRVSAAVEKFTIKYVSPVLSAQEISSVHSSTQIFDSMTVK
ARSATREVIATYSVDDIFIELVIQLPQNYPLGSITVESGRRVGVAVQQWRNWMLQLSTYL
THQNGSIMEGLALWKNNVDKRFEGIEDCMICFSVIHGSNYSLPKKGCRTCKKKFHSACLY
KWFTSSNKSTCPLCRETFF
NT seq
5280 nt
NT seq
+upstream
nt +downstream
nt
atggggggtaagaataaacagcgaactaaaggaaatgttcggccgtccagtagcggccga
gctgctgaagtactgacccgggagggtggtatcatcccggggtttgtgggctttgacaca
acggtcacttcggagctgagttatgtacctgcagtccacggcgcggaggagatagacaac
ctggtagatgctgacttccgtctggtgctcaggaaactctcgaagagggatgctgttacc
agactaaaagctgttcaagactttgggttcatgtgtcaggaacgggattctgaagaggtt
aaaggagtcctgccatactggccaagaatttactgcaagatatccatggaccatgatcgc
cggatcagagaggccacccagcaggcccttgagcagctggtgctgaaagtacgtcgcagc
ttggccccctttctgaagagcttgatgggccactggattctttcccagtgtgacacttac
acacctgcagcctctgctgcgtgccaggccttccaggctgctttctcacccaccaaacag
cctgaggcgctcagcttctgcaaggatgagatccttaacgtacttcaagatattttgtta
aaagaaacagcagacacactgagcgatccacaaagtgtaacagaggacgagagagaaggc
aaatatgtacgcatgctgaccagttctctgttgggggtaaagagactgctctccctgctt
gtccagcgtgacaggacggccatggaggaaagactagcacatcttcttaactctgggaaa
ttctggaagtacagcaaacacaagacaccacaggtgagaggggcatttttcgagatggtg
tgtgctctgtttgagttcactccaggactggtccaaactgaagcagcacgactctccacc
actgttctcctcagcattgacgacacagatcctgtagtgctgcctcctgtgtgggaggct
gttcttcatgtcgtgtctacaatacatgattgctggacacatgtgaatgccaagaagggc
ttcttacctaaactttgggttctacttaaagagggtggcaaaggcatggctaaagcactc
catccaaatctaatgccgctcatcagcaaactgccccaacaggtcactgagccaaccttg
gacttctacaccaccttcttctcttcgttcatacaaggtctgtctagtgaacgtgcagcg
acaagcccatcggaaagtgcagttatagtgacttctgttgttgagtgcttgaggtactgc
atactgcacaatacagaagaagaagaacagaaaaaaatacaaaccatgcttatttcacag
cagctcctgccactactagaaaaggctcttggcaatccctcccttcaaaatggtcctctt
ttcctttcggtcactgaaatgcttgtatcctgggagagaagggcaggcctacatagtgaa
gatgaagctaatggcagcagccatgtctttcaagaacttctggcagacttctgggatggg
cttggtcttttgtttgtgcgttatgccgacaatgaggatgctgatccacaagctttggaa
ggggtagccaccttgctgcaggtaatgcggtaccctgagagagtaaaaggaaagctcctc
cagaataagaaatctgtcaagatctgtttctctgagccagaggacaatgacaaaactgga
gttgagaagcctgttcagacagtatcggagctggtgaatgagaagccatttggttcccta
cacacccagcattttgaggatgtagtgtgtcagctggcacaactgtgcctggtgcatgtg
acagagaaaaactcggagagacatcttgttttcctctctcttctccttcaatctttccac
acacccagggtcttcagtacattggtcgaattggatgacaaaaaaatggacagagagcag
agagacgaggtgattatgaagaatccagcaatgcagttcctgctggagcgggtggtggtg
tggctggctgagaaagggcgcagagacactgaacacctggtggagatggtcttcagctcc
ctctacggctgcagccaccaagagaccacacgcatcctcaaccacatcaccacgatggat
ttacagtggggaattatcctgcaaattgtacagagggtatgtgcagatcctgagactctt
aaaagctgtcgagactggctgaaaggttcagttctgggtgagcaactcctgggattgact
gaggaactgtgcaaagtgggatgcagcacgcccaactttacctcttctaccagcaaccac
agttggacacttatcagcctggtcctctctcggcatcacaacaatgagtctctgataggt
gaggtgtatatggaaaagatcttagagaggctccatgccactctgtctgagaccaagagt
ctgtcagatgcaggcaacatggagccactcatctgcttcatctgtgatgtggcctccaca
ttcttctcttctgtacaagactgtcttctgcttctctctgctgaggaactcttgctcacg
gtcttccagctcacagcccaagatcagacactcactcacctgtctgactcacttttagat
aagctgagacaagtgtgtgtagctggggtccagtcattggtccaacactctgaatatgag
gtcaaggaaggtggtttcctgcacagtgcagccctttgggttacaaaccaactactcact
gtctctctggatattaaaagtttgcagattcttattttggctgtggagaacctagtggag
acaatcatctctgtttgcgatcaagattcctccctcctcatccagttctttacacaactg
acgcccagccagacagaatggactagaatcagacaagctttacctcctcagtggatcaaa
tcccccttactctcttgccgtcaccgaggagtttgcgaaaaacgctcaatggacatctgg
aagtttaggctgtcaactaggctgccagcccacctatgtgcctgtgccctgttggggagg
gtggcccagactgctgcattcatacctcgtgacaaaaagaatgcagaatgtccttcactc
tttgcaaaccttaagcacacagtttcagagttgttgtatgcactgcagtggtgtagggag
atagagtacatccctgccaatctcagcctgctgacagacttggggctggcagaaggactc
cagacccaggttcaaatgaaagatctgctggggacactctactcaaggtccgtggaagat
ggaggtctatggtctctgactctagaaaactacatccacaccaacaacctggcaaacact
cacagtgcaaccctgagggagctttacggcagttcagacagtttgttcccagtgtctcaa
agcaaactgagcacgctccaggtgctctgtcccaccatgagccaaaaagacagagagact
ctcgttgctctggcaactgctggaataatcaactggcaagagaatgacgatgtgtatggg
tgtctggcggtgctgttgtgctgtctaaaagccaacacacaagtagaggaggaggttgtg
caggctattgtggccacagtgatggagtggaggaacagcaaggaggactggtttctgttt
agcagtgacctgtcaaaagcaactgcagaacagttgaacattgctgtggagatgatgcgt
ttcttgtcctggctggtgactcattttccaacagttctagggagcagccagtgggacttc
ttgctctgctctatgttagcctggttggagactgccactgagaatgtaagcagtctgtgg
aacccatgggtgcagctgtttgtttgtgagaacactgcattgatagtgaagttgaaccag
ttcttcacgtcatcttcgcccgatgttctagagaagctgccatccgaactgattgctgaa
tggacagacttctttgtagaaggaatctacaacctgctgtttcctctgactatcaatatc
acagatgccttcactgacccggatgaccctgttttcccattggcggtactgcagtccgtt
ggtgtagctctgacatatgtgcctgtgcagctgcttaaacagaactccctgccaccacgg
ttcatagcagaccagaagacaaacttgccggagcccctccagacactcctcaacactttc
tgtcctctgctgctgtttaaggccaggcctctgcagatcacggtctatcacttgttagaa
aaggttatgcctcagctgcccgagtgcgatggggaaggagacaccaacaagtctgatgat
gatagagatgagccatgtctttctcctcctgcatctctgatggccatcctgtcaacctgt
gaggacctgtgtgatagtattctggcaggggttcaagtaggagagtttgcagtggtccag
cctctcagtgtggagtactcctgcatcctggcctacttgttggcctggaagcttctcctc
atctttttcaaatcctccccctcccatctgcgagcccattatgcccagtatcttaagaga
agctgctcccttaacaagctcctccttgacctttttaaactgatgcctgagaaccccatc
tatcccggccaggggccagagacaaaagaggccaaaaccttctttacagagagccagtct
ctggctgttgataacagcaagagtgttgagtgggagctccctcatctggcttgcagtgta
tactacagcacagtgcaggacctgcctgccatggtacggctatggtggaatggccaggag
aagagagtgagcgcagctgtggagaagttcactattaaatatgtcagccctgttctctca
gcccaggagatatcatctgtccactcaagcactcaaatctttgacagtatgactgtgaag
gcccgctcagcaacgcgggaggtgattgctacctattctgtggatgacatcttcattgag
ttggtgattcagctaccacagaactaccctctaggctctatcactgtagagagtggaagg
cgggtgggagttgccgtacagcagtggaggaactggatgctgcaactgagcacctacctc
acacatcagaacggcagcataatggagggcttggctctatggaagaacaacgtggataag
cgtttcgagggaatagaggattgtatgatctgcttctctgttatccacggttccaactat
tccctgcctaagaagggttgccgcacctgcaaaaagaaattccactcagcgtgtttgtac
aaatggttcacatccagcaacaagtccacctgtccgctgtgcagagaaaccttcttctaa
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