Etheostoma spectabile (orangethroat darter): 116700056
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Entry
116700056 CDS
T08457
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116700056 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116700056 (ddx5)
03009 Ribosome biogenesis [BR:
esp03009
]
116700056 (ddx5)
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116700056 (ddx5)
Spliceosome [BR:
esp03041
]
Complex A
U1 snRNP components
U1 related factors
116700056 (ddx5)
Complex B
116700056 (ddx5)
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
Pre-60S particles
Helicases
116700056 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
116700056
NCBI-ProteinID:
XP_032388787
LinkDB
All DBs
Position
2:complement(18835623..18847929)
Genome browser
AA seq
634 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQK
NFYQEHTDATRRPPQEVEQYRRSKEVTVKGRDCPKPIIKFHEAAFPSYVMEVIAKQNWSD
PTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YIQINIGAMQLSANHNILQIVDVCNDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFSNGPKSAFGGNKAQNGG
SYGGNGGNSSGSYGNNNYSNSNGQGNFSTPGNQAGAFGNQSFQGPPQFGGMQRVTQNGMN
HPPFPFNSQPPPQAQQPPPPPPMVPYPMPPPFPQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcagacagggatcgtggcagagatagagggtatggtggagggccccct
cgttttggtggtggtggtggaggaaataggggcggacctccaccaggaaagtttggcaac
cctggcgagaggctgcgaaagaagcactggaacctcgacgagcttccaaagtttcagaag
aatttctaccaggaacatacagatgccactcgcagaccacctcaagaggttgaacagtac
cgaagaagcaaagaagttacagtcaaaggccgggattgccccaaaccaattataaaattc
catgaagctgcatttccaagctacgtcatggaagttattgccaaacagaactggtctgat
ccaactccgattcagtctcaggggtggccagttgccctgagtggcaaagacatggtcggc
atcgctcaaactgggtctgggaaaacccttgcataccttcttcctgcaattgtgcacatc
caacatcagccattcttggagcatggagatggacctatttgcttggtgctggcgccaacc
cgtgagctggctcaacaggtgcaacaggtagctgctgaatacggccgggcctcccgtctc
aagagcacctgcatctacggtggtgcgcccaaaggaccccaaatcagggaccttgagagg
ggtgttgagatttgcatcgctaccccaggccgtctcattgacttcctggagtgtggtaaa
actaatttgcgtcgttgcacctatctggtgctggatgaagcagaccgcatgctggacatg
ggatttgaacctcagattcgcaagatagtggaacaaattcggccagaccgacagaccctg
atgtggagcgccacctggcctaaggaagttcgccagctggctgaagacttcctgaaggac
tacatccagatcaacattggcgcgatgcagctcagtgccaaccacaacatcctgcagata
gttgatgtttgcaacgacatggagaaggaggacaagctgatccgtttgctagaggagata
atgagtgaaaaggagaacaaaaccattatttttgtggagaccaaaaggcgttgtgatgag
ctcaccaggaggatgagaagagatgggtggccagcaatgggaattcatggagacaagagc
cagcaggagagggactgggttcttaatgagttcagatatggcaaagctccaatcctcatc
gctacagatgtggcctcccgtggcttggatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctctgaggattatatccaccgaattggacgcacagcccgaagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaagccagtgacctg
atctctgtgctgcgcgaggccaaccaggccataaaccccaagctgatccagatggcagag
gacagaggaggtcgtggaagggggggaagaggtggctacaaggatgatcgtcgggatagg
tattctgggggtgggagaagcaactttggcggtagtagctacagggacagggacagtgat
agagggttcagcaatggtccaaagagtgcctttggtggtaataaggcccaaaatggtggc
agctatggaggtaacggtggtaactctagtggtagctatggaaacaacaattatagcaac
agcaatggacagggtaattttagtactccaggaaaccaggcgggtgcctttggtaaccaa
agcttccagggcccccctcagtttggaggcatgcagagggtcactcagaatggcatgaac
cacccaccattcccattcaactctcagccaccaccacaggcccaacagccaccaccccca
ccaccaatggtgccctaccccatgccaccacccttcccacaatag
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