Etheostoma spectabile (orangethroat darter): 116700370
Help
Entry
116700370 CDS
T08457
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
116700370
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
esp04515
]
116700370
Cell adhesion molecules [BR:
esp04515
]
Immunoglobulin superfamily
ROBO family
116700370
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
fn3
Ig_VEGFR-1-like_5th
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Unc5_NetrinR_N
Ig_PDGFR_d4
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
116700370
NCBI-ProteinID:
XP_032389382
LinkDB
All DBs
Position
13:28769835..28855491
Genome browser
AA seq
1604 aa
AA seq
DB search
MLAVQSPITFLLISLLGVNQLQPAHASDTDKHRGNREVITQTPASEPASEQDNSFGYKGS
RLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTVEWYKDGERVETDRDNPRSHR
MLLPSGSLFFLRIIHGRRSKPDDGSYVCVARNYLGQAISHNASLEVAILRDDFRQNPVDV
MVAVGEPAVLECQPPRGHPEPTISWRRDGTNLDDRDERITIRSGKLMITNTRKSDAGKYI
CVGTNMVGERESEIAELTVLERPTFVKRPSSVVVLAEESVEFHCVVQGDPVPTVRWRKDD
SDLPKGRFEILEDHTLIVRQVTSLDEGSYTCVVENMVGKSESSATLTVHVNTVPPAFAIR
PRNQVVAVGRTVTFQCKATGNPQPAIFWQREGSESLLFSYQPPQPFSRLSVSQMGSLTIT
DVQRSDGGFYSCQALNIAGSVITKALLEVTDSGSDHPPPVIRQGPLNQTIPVDSTVVLGC
QTADFPSPTVHWKKDGVLVSPMDSRMSIADTGSLEIRYAKLGDTGFYTCVASSPNGEASW
TAYLQVEEFGVVVQSSQPIDPSLIPSAPSKPEVTDISHTTVTLSWKTNPNAGATPTSYLI
EAFSYTLGSRWVTLAEHIKTQTFVLRNLRPATVYLFLVRAVNAYGLSDPSPISDSVRTQD
STSTMQGVDHRHIQRELGDVVIHLHPPTVLSSSAVRMQWMVEQQSTYIQGYKVLYRASAE
HGQPEGQWSVLEVHAPREDGVVIGQLKRGSIYEFKVRPFFDEFQGADSEVKVVRTLEEAP
SRAPQGVTVTKSETNGTAILVAWRPPPQQEEAGVIQEYKIWCLGNESRYHVNQSVDGSIF
SVLISNLAPGIRYSVEVAASNGAGPGVRSDVTFFQLDSAGQMMDISEERDTLSQISDVVR
QPAFIAGIGATCWLVLMIFSVWLYRHRKKRSGLSSTYTGIRKVPSFTFTPTVAYQRGESV
CSAARPGLLSMGEPLNQLWLPDNWPNACANHKDCSINCCNNGNGTSDSNMTTYSRPADCI
ANYGNHTENKQGGQLGSETAIYSDVNLSNKLNEIKTFNNSNLCYASPGGDSAATYEPIPY
ATTQLIQAGIKNKAGTGVAMAEPLDMPCWKQPPNLPPLPKEMAAQMQYNIIEQNMLNKDH
LQGSEGMIHPKTIPYNQTRAHSSGGSHHSSDRGSNSTSGSQNQKKGTRAPKIPKHNAVNW
GEAPSRPHANAWDCDEYSLPMERSFDPEERMEGCPPPPLRGTASSPPEVSHSHPPNATPQ
GDLSNGLHDETEHLSQHNSGHPRPFSPTHTYSSIPFCMDTDVQEEDEEEEEEEAEEETDA
ELADSNYSQHHKRQKHKHQLHHPSPHNLLLHGLEQTPASSTGDLDRSVTGSMVNSWGSAS
EDNISSGRSSVVSTSEGSFFTDGDFNQAVASSRDIVGLRMCRYPEESGRRHQRPSSPMST
DSNMSPAITHKRPRRHKQNQFGQQGYQPKDIFNDDSCMPLNFPSQMSHSDYKVRGATLPR
MGSGEARGRRGSAGTHRVREASLEQRESKDKHKTPLGGKGSSKSRQHSEFGDVLLYSRPS
FPSGQAQREPDDTNSSSFMSCGDLRTKQGGQLAPTGQVEEFLKS
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atgctggctgtacaatcccccatcacgttccttctcatcagcctgctcggtgtcaaccag
ctgcagccggcccacgcatcagatacagataaacacagagggaaccgtgaggtcatcacc
caaacacctgcatctgagccagcgtctgaacaagacaacagcttcggatacaaagggtct
cgtctccgccaggaagacttccctccccgcattgtggagcacccctctgacctcattgtg
tccaaaggggaaccagccactctcaactgtaaggcggagggccgtccaacccccacggtg
gaatggtacaaagatggggagcgcgttgagacggaccgcgacaacccccgctcccaccgc
atgctgctgcccagcgggtccctcttcttcctacgtatcatccatggacgacggagcaag
cccgacgatggcagctacgtgtgcgttgcccgaaactatctgggccaggcgatcagtcac
aatgcatcactggaagtagccattttacgtgatgacttcagacagaacccagtggatgtc
atggtcgcagtgggggagccggctgtgctggagtgccaaccacctcgtgggcaccctgaa
cccaccatctcctggaggagagatggaaccaacttagatgacagagatgaacgcatcaca
attcgcagcggcaagctgatgatcaccaacaccaggaagagcgatgcagggaaatacatc
tgcgttgggaccaacatggtgggagagagggagagcgagatcgccgaactcactgtgctt
gagcggccaacctttgtgaagcggcccagcagtgtggtggtgttggctgaggagagcgtg
gagttccactgtgtggttcaaggagaccctgttcccactgttcgctggagaaaagatgat
tctgacctgcctaaggggcgatttgaaatcctagaagaccataccttgatcgttcgccaa
gtgacctctttagatgagggctcctatacgtgtgtggtggagaacatggttggaaagtct
gaatcatccgccacgctcaccgtacacgtcaatactgtacccccagcatttgctatacgc
cccaggaaccaggtggtggcagtgggcaggacggtcaccttccagtgcaaggccactggc
aacccacagcccgctatcttctggcagagggagggcagtgagagtttgctgttctcgtac
cagccgccacagccctttagccgtctgtctgtctcccagatgggcagtttgaccattacc
gacgttcagcgctctgatggcggcttttacagttgccaggctctcaacatcgctggcagt
gttattaccaaagcactgctggaggtcacagactctggatcagaccatcctccccctgtg
attagacagggcccactcaatcagaccattcctgtggacagcacagtggtcctgggttgc
caaacagctgactttccatctcctacggtccactggaagaaggacggtgtcctggtttct
cccatggactcccgcatgtccatagcagacacaggatcactagagattcgctacgctaag
ctgggagatacaggcttctacacttgtgtagcttctagtcccaatggagaagcttcctgg
acagcatacttacaggtggaggagtttggagttgttgttcagtccagtcagccgatagac
cctagtctgattcctagtgctccgtccaaacccgaggtgactgacatcagccataccact
gtcactctgtcgtggaaaacaaaccccaatgctggtgcaacacctacatcttacctgatt
gaggcattcagttatacgttaggaagcagatgggtgaccctagctgagcatataaagaca
cagacctttgtactgaggaacctgaggccagcaactgtctacctctttttggtcagagcg
gtgaatgcttacggccttagtgaccccagtccaatctctgactctgtcagaacacaggac
agcacttccaccatgcagggagtggatcaccgacacatccagagggagctgggagatgta
gttatccacctgcacccaccaactgttctttcatcttctgctgtcaggatgcagtggatg
gtcgagcagcagtccacatacatccagggttacaaggtgctttacagggcatccgctgag
catggccagccagagggccagtggagtgtcctggaagtacacgccccacgggaggacggg
gtggtaatcggtcagctgaagcgaggctccatctacgagttcaaagtgcgccctttcttt
gatgagttccagggagctgacagtgaggtgaaggtggtcaggacattggaagaagcccct
agcagagcaccccagggtgttacagtgacaaagagtgagaccaatgggaccgcaatcctc
gttgcttggagaccgcctccgcaacaggaagaagctggagtcattcaggagtacaagatc
tggtgcctgggtaatgagagtcgctatcacgttaaccagtcggtcgacggctccatcttc
tctgtgctcatctccaatctggcaccgggaattcgctacagcgtagaagttgccgccagc
aatggtgctggacctggtgtcaggagtgatgtcacttttttccaattagactctgcaggc
cagatgatggatatcagtgaggaaagagacacgttgtctcagatctcagatgtggtgagg
caaccggcatttattgctggcattggcgccacctgctggttggtcctcatgatcttcagt
gtgtggctctaccgtcaccgcaagaagagaagtggcctcagcagcacatacaccggcatc
cgcaaggtcccctcattcacctttacacctacagtggcgtatcagagaggagaatctgtg
tgcagtgctgccagacccggccttctcagcatgggtgaacctttaaaccagctgtggctg
ccagacaattggccaaatgcatgtgccaatcacaaggactgtagcatcaactgctgcaat
aatggcaatggcaccagtgacagcaacatgacaacatacagccgaccagctgactgcata
gctaactatggaaaccacacagaaaacaaacaggggggacagcttggttctgagacggcc
atttacagcgatgtgaacctctccaacaagctcaatgagattaaaacgttcaacaactcc
aacttgtgctacgcgagtccgggaggagattcagcagccacatatgaacccatcccatat
gccaccacacagctcattcaagccggcattaaaaataaggcaggcactggtgtcgctatg
gcagagcctctggacatgccctgctggaaacagccccccaacctgcctccattaccaaag
gagatggcagcacagatgcaatacaacataattgagcaaaacatgctaaataaagatcat
ctgcaaggaagtgaaggaatgatccatcctaaaaccatcccttacaaccagacccgggcc
cacagctcaggaggctcacaccacagctcagacagaggcagcaacagcacctcagggagt
caaaatcaaaagaaaggaacacgggccccaaagatcccaaaacataatgcagtaaactgg
ggagaagctccgtctcgtcctcacgctaatgcatgggactgtgatgagtatagcctaccc
atggaaaggagttttgatccagaggagagaatggaaggctgccctcctccaccacttaga
gggactgcctcctcccctcctgaagtgtctcatagtcacccacctaacgcaacaccacag
ggagacctgagcaatggcctgcacgatgaaaccgagcacctcagccaacacaatagcggc
caccctcgccctttttccccaacacacacctacagctccatacccttctgcatggacacc
gatgtacaggaggaggatgaggaggaagaggaggaggaggcagaagaggagacagacgca
gagctcgctgacagtaactacagccaacaccacaaacggcagaagcacaaacaccagctg
caccatccctctccacacaatctgcttcttcatgggctggagcagaccccagcctccagc
actggggatctggacagatcagtcacggggtccatggtcaacagctggggctcagcatct
gaggacaacatctcatctggccggtccagtgttgtcagcacctcggaaggatccttcttt
acagacggcgatttcaaccaggcagtggcctcttcgcgggatattgtaggcctgcgcatg
tgcagatacccagaggagtcagggcggaggcaccagcggcccagcagccccatgtccaca
gacagcaacatgagtcctgcaataacacataaaagacccagacggcataaacagaaccag
tttggtcaacagggctaccaacccaaagatatcttcaacgacgactcgtgcatgcctttg
aattttccaagccagatgtcccacagcgactataaagtgaggggggccacgctgcctcgg
atgggctctggggaggcccggggtcgacggggcagcgccgggactcaccgggtcagggag
gcttcacttgagcagagagagagcaaggacaagcacaagactccactaggagggaaagga
agcagcaaaagccgacagcactcagaatttggggatgtccttctgtacagtcgtccctct
ttcccatcaggtcaagctcagagggagcctgatgatactaattcatccagctttatgtca
tgtggagacttaaggaccaaacagggaggacagctggcacctacaggacaggtggaagag
ttcctgaaaagctaa
DBGET
integrated database retrieval system
