Etheostoma spectabile (orangethroat darter): 116700564
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Entry
116700564 CDS
T08457
Symbol
rfc3
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03030
DNA replication
esp03410
Base excision repair
esp03420
Nucleotide excision repair
esp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116700564 (rfc3)
03410 Base excision repair
116700564 (rfc3)
03420 Nucleotide excision repair
116700564 (rfc3)
03430 Mismatch repair
116700564 (rfc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
esp03032
]
116700564 (rfc3)
03036 Chromosome and associated proteins [BR:
esp03036
]
116700564 (rfc3)
03400 DNA repair and recombination proteins [BR:
esp03400
]
116700564 (rfc3)
DNA replication proteins [BR:
esp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116700564 (rfc3)
DNA Replication Termination Factors
ELG1-RFC complex
116700564 (rfc3)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
116700564 (rfc3)
DNA repair and recombination proteins [BR:
esp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116700564 (rfc3)
Check point factors
HRAD17(Rad24)-RFC complex
116700564 (rfc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA
AAA_22
AAA_16
DUF2247
AAA_11
AAA_5
ABC_tran
Motif
Other DBs
NCBI-GeneID:
116700564
NCBI-ProteinID:
XP_032389747
LinkDB
All DBs
Position
13:complement(22231386..22234552)
Genome browser
AA seq
380 aa
AA seq
DB search
MNNISRECRVRLSTRTRSYSIYNAMSLWVDKYRPTSLAKLDYHKEQATQLKNLVQCGDFP
HLLVYGPSGAGKKTRIMCLLRELYGAGVEKLRIEHQTIVAPSKKKIEINTIASNYHLEVN
PSDAGNQDRVVIQELIKTLAQSQQIQSSSQREFKVVLLTEVDRLTKDAQHALRRTMEKYM
YTCRLILCSSSTSKVIGPIRSRCLAIRVPLPSTEEVCNVLTSICKKEGLLLPPELAKQIS
DKSGRNLRKALLMCEACRVQQYPFSADQDVPETDWEVYLRETANAIVSQQSPQRLLEVRA
RLYELLTHCIPPDVIMKGLVTELLSNCDGQLKTEVAQMAAYYEHRLQLGSKAIYHLEAFT
AKFMAIYKKFMEDGLDDMMF
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaataatatttcgcgggagtgtagagtcagactgtcaacacggactagaagttattca
atttataacgcaatgagtttgtgggtggataaatatcgaccgacttccctcgcgaaactc
gactatcataaagagcaagcaactcagctgaaaaacctggttcaatgtggcgacttccct
cacctgttggtgtacgggccgtcaggcgcggggaagaagacccgcatcatgtgtctgctg
agggagctgtatggagctggggtggagaagctccgcatagagcaccagaccatcgtggct
ccgtcaaagaagaaaattgagattaacacaatagccagcaactaccacttggaagtcaac
ccaagtgatgctggcaaccaggaccgtgtggtgattcaagagctaattaaaactttggct
cagtcccaacagatacagtcaagctcccaaagagagtttaaagtggtgttgctaaccgag
gtggacagactcacaaaggatgcccagcatgctttgcgtcgaacaatggaaaagtacatg
tacacctgtcgtctcatcctctgctctagctccacctccaaagtcattgggccaattcgg
agccgttgtctggctatcagagttcctctgccgagcacagaagaggtctgtaatgttttg
acatcaatctgtaaaaaggagggtctgctcctcccacctgagctggccaagcaaatctct
gacaagtctggtcgcaacctccgcaaagcccttttgatgtgtgaggcctgcagagtgcag
cagtatccattctcagctgaccaagacgtcccagagacggactgggaggtctacctcaga
gaaaccgctaatgccatcgtcagccagcagagccctcagaggttgttggaggttcgagcc
aggctgtacgagttgctgactcactgcatcccccctgatgtcattatgaagggtctggta
acagagttgttgagtaactgcgatggtcagctgaagacagaggtggctcaaatggcagcc
tactacgaacacagattgcagctgggcagcaaagctatctaccaccttgaggccttcact
gccaagttcatggccatctacaagaaattcatggaagacggtctggatgacatgatgttt
tga
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