Etheostoma spectabile (orangethroat darter): 116700587
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Entry
116700587 CDS
T08457
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03013
Nucleocytoplasmic transport
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116700587 (thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
116700587 (thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116700587 (thoc2)
03041 Spliceosome [BR:
esp03041
]
116700587 (thoc2)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116700587 (thoc2)
Spliceosome [BR:
esp03041
]
Complex C
Other components
EJC/TREX
116700587 (thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116700587 (thoc2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
116700587
NCBI-ProteinID:
XP_032389799
LinkDB
All DBs
Position
13:complement(27244726..27273891)
Genome browser
AA seq
1563 aa
AA seq
DB search
MATLILPGEWIKNWEKSGKHEFVQLCKDLTEKTDHGSDVRDIQAALYELCWQVVHGNLKL
DLVASVLGDMMELRDDMPSILADVFSILDLETGALEEKNKREHYTQLVGACLFFVPEAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQEL
SGNITSHLVLESIKSLIGCFNLDPNRVLDIILEVYESRSDQDEFFLSLIKSYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHIAAALLHHNLIELEDLYVHLMPVDATIIEEHKRDISE
AKQIARKLVMVVLPSEKSEDKDKEKEKEEEKNEKPPDNQKLGLLEALLRIGDWHNAQSIM
DQMPSFYATSHKAIALALCQLVHLTVEPLYRRAGLPKGARGCVMHPLRSKRAPRPAENFE
DLRRDTFSMICYLGPHLSHDPILFAKIVRLGKSFMKEYQSDGRPDVKDKMETLLSCFLSI
ADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTV
ERAKYIMKRLTKENVKQSGRQIGKLSHSNPTILFDYMLSQIQWYDNLIVPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDALLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGHLYDQCHDTLLQFGGFLAS
NLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYAHQILSKYDELKKTEKGNRQQQKV
HKYVAACEQVMTPVHEAVVSLHPARVWDDLRPQFYATFWSLTMYDLAVPHSAYEREVNKL
KVQIKAIEENPEIPLNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCLFPRCIFSSIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSAIIY
TVASCTENESHRYGRFLSCMLETVTRWHSDRAIYEKECVNYPGFLTIFRATGFDGGNKAD
QLDYENFRHVVHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPCYPKVLNLGQALEC
RVHKICLEEKDKRPDLYALAMGYSGRLKGQKVHMVPENEFHHKEQPARSSTPANQQNGPG
STGKPATSTCKTEEGTEDGDRGKDKSQGTTKPVNKANSAAAKVTTSNGNGALNSTKAIKE
RDDKEKSGKEKKEKKEKTPGSTPETKVENRREKQRDERAGKEERVAREGKDKTPKADREK
VKAEEKSSKDDKAKAGNGEPMEPSRERDAIKESKSKEKGDRGAVAGSLKSPVPRSESAES
ERDHKRRKLDSHSSPSHSSSVKDNSNEPKESTSKHHANYNSVSRSKSREREMEKKDSDGT
QGRSKEKKEDKDRKDRKRDHAVNDRETSQESKRKKDENGTNSTKNSKSVSPSCDSPLSAE
KEKSKRSKSSSKEKAESVKPERTSSGGKKESRHDKEKSEKKEKRDSSGGKEEKKHHKSSD
KHR
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atggcgacactcatcctccctggtgaatggatcaaaaactgggaaaaatcaggaaaacac
gagtttgtacaactctgcaaagatctcacagaaaaaacagatcatggaagtgatgttaga
gacatacaggctgccttatacgagctctgctggcaagttgtacatgggaacctgaagttg
gatcttgtcgccagcgtccttggggacatgatggaactccgagatgacatgccatcaatt
ttagcagatgttttcagtatactagatttagagactggtgcactggaagaaaaaaacaaa
cgtgaacattacacacaactggtgggggcatgtttgttttttgttcctgaggccatcctg
aaagagaggctggatccagaaacccttgaatctcttggacttataaaacaagcccatcag
ttcaatcagaagattgtaaaaatcaagactaaattattttacaagcagcagaagtttaac
ttgctaagggaagagaatgagggctatgccaaacttatcactgagcttggccaagaactc
tcaggcaacatcaccagccacctagtcctggagagcatcaagtccctcataggatgtttc
aacttggaccctaatcgtgttttggacatcatcctggaggtgtacgagagtcgatctgac
caagatgagttctttctgtctctcatcaagtcctacatgtgtgagccactcaccctctgc
cacatcctgggctttaagttcaaattctaccaggagccaaatgaggaaactcccaagtct
ctttaccacattgctgctgctctgcttcaccataacctgattgagctggaagatctctac
gtacatcttatgccagtagatgccaccattatagaggaacacaaacgagatatctcagag
gccaagcagatcgctcgcaagttggtcatggttgtgttgccctcagagaaaagtgaagac
aaagacaaggagaaagaaaaggaggaggagaagaatgagaagccacctgataaccagaag
cttgggctgttggaagcgctgcttagaattggagactggcacaacgcccaaagtattatg
gaccagatgccgtccttctatgctacttctcacaaggccattgcgctggcactctgccag
cttgtgcacctgactgtggaacctctttacagaagggctggccttccgaaaggggcaagg
ggatgtgtgatgcatccattgaggagcaagcgagcccctcggcctgcagagaactttgaa
gacctacgcagggacacattcagcatgatctgctacctaggtcctcacctctctcatgac
cctatcctcttcgccaagattgtgcgtctgggcaagtccttcatgaaagagtatcaaagt
gatggcagacctgatgtcaaagacaaaatggaaacgttattgagttgtttcctgagtatt
gcagatcaggtcctactcccttctctttctctgatggagtgtaatgcttgcatgtccgag
gaactgtggggtctctttaaactctttccctaccagcacaggtaccggttatatggacag
tggaagaatgagacatataccagccatccactgttggttaaagtcaaagctcagactgtg
gaaagggccaaatacataatgaagcggttgaccaaagagaatgtgaaacaatctggaagg
cagattggaaaactgagccatagcaatcccaccatcctctttgattatatgctgtctcag
atccagtggtacgacaacctaatcgttccagtggtggactccttgaaatacctcacatcc
ctcaactatgatgtcttggcctattgcatcattgaggctctggcaaatcctgagaaggag
aagatgaaacacgatgacaccaccatttcctcatggcttcagagcctggcaagcctgtgt
ggagccgtgttcagaaaatacccaattgagttggctggccttcttcaatatgtcaccaat
cagctaaaagcaggaaagagttttgacctgttgatcctgaaagaggtggtgcagaaaatg
gctggcattgagatcacagatgagatgacttctgagcagttagaggccatgaccggaggg
gagcaactcaaagctgagggtggctacttcggtcagatcaggaacactaagaagtcatca
cagcgtttgaaggatgcactgctggaccatgaattggccttgcctctgtgtttactcatg
gcccagcaaagaaatggtgtggttttcttagagggcggagagaaacaccttaaacttgtt
ggccacctctatgaccagtgtcatgacacgttattgcagtttggtggctttctggcctcc
aaccttagcactgaggactacatcaagcgggttccctccattgacatcctttgtaaccag
ttccacactccacatgatgctgccttcttcctgtctcggccaatgtatgcccatcagatt
ttgtctaagtacgatgagctgaagaaaacagaaaaaggcaaccggcagcagcagaaggta
cacaagtatgtggcagcctgtgaacaggtgatgacaccagtgcatgaggctgtagtgtcc
ctccatccagccagggtctgggacgatctccgccctcagttctacgccaccttctggtcc
ctcaccatgtatgacctggctgttccacattctgcctacgagcgtgaggtcaacaagctc
aaggtccagatcaaggccattgaggagaacccggagatacccttgaataagaaaaagaag
gaaaaggaacgctgcactgccctccaagaaaaactgcaggaggaggagaagaagcaactg
gagcacgtccaaagggttctacaccgtctcaaacttgagaaagacaactggttgttagca
aaatccacaaagaacgaaacaataacaaagttcctgcagctctgtctgttccctcgctgc
atcttctcttccatcgacgctgtgtattgtgcccgttttgttgagctggtccaccagcag
aagacacccaacttctgcaccctcctgtgctatgacagggtgttctctgccatcatttac
actgtggccagctgtacagagaatgagtctcaccgctacggacgcttcctctcctgtatg
ctagagacagtgacccgttggcacagcgaccgcgcaatctatgagaaggagtgtgtcaat
tacccaggattcctgaccatcttcagagccacaggctttgacggcgggaacaaagcagat
caactggattatgagaacttcaggcatgtggtgcacaaatggcactacatgctgactaaa
gcttcggttcactgcctggagacaggagattacacccacatccggaatattctcattgtg
ctcaccaagatcctgccctgctatcctaaggtcctaaacctgggccaagcgctggaatgc
cgtgtccacaagatctgcctcgaggagaaggacaagaggccagacctctatgccttagca
atgggttattcaggtcggttgaaaggccagaaggtgcatatggtccctgagaatgagttt
caccataaggagcagccagcacgcagttccacccctgccaatcaacagaacggccccggc
agcacaggcaagcctgccaccagcacatgcaagacagaggaggggacagaggatggtgat
cggggcaaggataaatctcaagggaccacaaagccagtgaacaaagccaacagtgcagcg
gccaaagtgaccaccagcaatggaaacggtgctcttaacagcaccaaagccattaaagaa
cgagacgacaaagaaaaaagtgggaaggagaaaaaagagaaaaaggaaaagacaccaggc
agcactcctgagaccaaggtggagaaccgtcgggagaagcagagagacgagagagcaggg
aaggaggagcgggtggcacgtgagggtaaggacaagacccccaaggcagacagggagaaa
gtgaaggctgaggagaagagcagcaaagacgacaaggccaaagccggcaacggggagccc
atggagccgtccagggagcgcgatgccatcaaggagtccaagagcaaggagaaaggagac
agaggagctgtggccgggtccctcaagtcaccagttcccagatcggagtcagccgaatca
gagagggatcacaaaagacgaaagctcgacagtcactcttctccgtcccactcctcgtct
gttaaggacaatagcaacgaacccaaggagtccacatccaagcaccacgccaactacaat
tcagtttcccggtccaagagcagagagagggagatggagaagaaagattcagacggcaca
caaggccgatccaaagagaagaaggaagacaaggatcggaaagacaggaaaagagaccat
gctgtcaatgaccgtgagacgagccaagagtccaaacgtaaaaaggacgagaatggaacg
aattccaccaagaacagcaagagtgtgagtccttcctgtgactccccgctttcagccgaa
aaagagaagagcaaaagatccaaatcttccagtaaagagaaggccgagtctgtgaaacct
gagcggacatcctctggaggcaaaaaggagtccagacacgacaaagagaaatctgaaaag
aaagagaagagggacagcagcggaggaaaggaagagaaaaagcatcataaatcctctgac
aagcacagataa
DBGET
integrated database retrieval system
