Etheostoma spectabile (orangethroat darter): 116701243
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Entry
116701243 CDS
T08457
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116701243
NCBI-ProteinID:
XP_032390730
LinkDB
All DBs
Position
14:21161534..21261262
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AA seq
1622 aa
AA seq
DB search
MELRLGFRITLVLVILASTLSGEGVEAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQW
VANLVESFDVAPDKTRVAVVRYSDRPTTEFTLGRHRTLEDVKRAASNIRYLGGNTMTGDA
ISYTTTNIFTERNGARPAARGIQKVAILLTDGRSQDYVLEPSKEAAKAGIRMFAVGIGEA
LKVELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTSY
GLEEVPGFDLMEYFSVRDILGTRVDEGQSSYVRLGTMPVVQQTEDVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQVFDKYGIPQVSIRLDGENKGVEYNAVGLTKDAVRAVFKNPEVDN
LFDRNWHKIALSVEAKSVSLYLDCKHIQTLPIGDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKHAELETCCDIPNGPCPKKVVTEAPPVEILTPTPTAMEQQKVPEVNCSCPA
GDKGDTGPPGVAGPKGEKGDAGLKGAIGSPGIRGEKGETGNVNSVKGDRGEKGDSGSIGL
TGAPGQKGEKGLGGVPGIDGLSGDKGDKGEAGRAGNPGLPGPAGQKGIQGDEGTAGTPGP
KGVTGESGIKGEKGSPGATGVAGLDGFPGKPGVPGKDGLRGLVGAPGPGGIKGIKGERGL
PGLPGDVFHKEGLQGEKGDPGPPGPPGPEGPPGPQGPPGLQGEAGQPGEFGQRGKKGESG
LPGVDGLPGPPGPLGPPGPPGIQGHTGPPGLPGEIGFSGKHGEPGKPGLPGKDGLDGLPG
NDGAMGPRGERGADGFAGKPGPKGDDGPPGPRGPPGERGEAGSPGQQGGDGVRGDRGIPG
ERGQDGPLGPKGEKGDKGEVGARGLPGIPGNVANVIPEPGEPGIPGEKGAKGDQGSPGET
GQRGLPGEQGFKGPAGPAGPKGEPGLKGETGRVGDPGPPGLAGPQGPRGLPGNVGIPGII
GPPGPAGQRGDKGEQGKPGQAGPSGPPGDPGLTGPPGPPGKGKDGQNGETGPQGIQGPPG
PKGQPGSRGEPGLPGDRGSAGEGKVGQQGPPGNNGLPGPPGLRGLPGVAGPQGPAGHNGL
PGRPGEKGSPGEPGKAADLSDLNLKDVCSDCPAGPPGQPGLPGVPGDKGHQGPPGKNGQD
GYQGPPGAAGAQGPPGSDGGKGIKGDRGPAGGPGEKGDKGHPGPPGHPGTPGLMGTPGND
GQPGSVGPPGPPGEKGKEGLKGIQGPPGLPGLIGQPGKMGKDGRPGETGEPGKQGEPGPA
GNPGLRGLPGFKGHRGESGAPGPKGEDGKPGSAGHDGKPGKEGPMGPPGREGISGPSGDS
GKPGEPGPSGKAGLPGSPGLRGDKGEAGNPGLPGFSGPKGPSGPPGPIGPEGKQGMPGRV
GDRGLKGDKGDSGVKGDKGTSGDPGMPGNPGPPGRKGHTGMMGMSGPPGEIGPPGPQGVS
GNPGLPGQRGESVSLEQMRRLIQEELAKQLDAKMAYLMAQMQPAHVKSTAGRPGPPGPPG
KDGGSGRPGPPGEPGMPGQNGGEGPRGPVGPKGEKGTRGEKGEPGIGERGEQGPSGPIGP
AGLPGYGKDGSPGQAGAQGEPGNPGPHGQPGPPGPTGQCDPTQCAYYASLAQRPHTKNVK
GT
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggaattacgactgggatttaggattaccctggtcttggtcatcctggcctcaactctt
tccggcgagggagtggaagcacagagggcaggatgtaaaaatgtccactatgacttggcg
tttatcctggatacctcatccagcgttggaaaagagaatttcgagaagatcaggcaatgg
gtggccaacctcgtcgagtcgttcgatgtggcgccagacaagacgagagtagccgtggtt
cgctacagcgacaggcccaccacggagttcaccctgggtagacacaggaccctggaggat
gtcaagcgagctgccagtaacatacgctacctgggggggaatacaatgaccggggatgct
atcagctacaccaccaccaatatcttcacggagcggaacggagcccggcccgcagccaga
ggcattcagaaggtggccatccttctcacagacggccgaagccaggattatgttctggag
ccctcgaaggaggctgccaaagctggcatcaggatgtttgctgtgggcatcggggaggcg
ctgaaggtggagctggaggagattgccgccgagccaaagaatgcccacgtcttccatgtg
acagacttcaatgccattgacaagatcagaggccggctgcggaggaggctgtgtgagaat
gtcctgtgtccaaacatgaaggttcaacccgatcgattcaagcccaacagcaccagttat
ggtctggaagaggttccagggttcgacctgatggagtacttcagtgtgagagatattctg
ggaaccagagttgatgaaggccaaagttcttacgttcgccttggcaccatgcccgttgtg
cagcaaacagaagacgtgtttcctcaagggttgccagacgaatatgccttcgtgacgaca
ttcaaattcaggaaaacctcaagacgtgaagattggtacctctggcaggtttttgacaaa
tatggaatcccacaggtgtccatccgcttggacggggagaacaagggggtggagtacaat
gccgttggcctgacaaaagacgccgtccgagctgtgttcaagaacccagaagtcgacaac
ctgtttgatcgcaactggcacaagatcgccctcagcgtggaggccaagtctgtgtctctg
tacctggactgcaaacacatccagactctgcccattggagaccgggaggacatcgatatc
caggggaagacagtgattgggaagaggctttacgacagtgtcccaatcgattttgacctc
cagaggatgatgatttactgcgattccaagcacgcagagctggaaacctgttgtgatatt
cccaatggtccttgccctaagaaagtggtgacggaggccccccctgtggagatcctgacc
ccgacacctactgctatggagcagcagaaagtccctgaagtgaactgttcgtgccctgca
ggagataagggagatactggtccgcctggtgttgcgggccctaagggtgaaaagggtgac
gctggccttaagggtgccatcggatcgcctggaatcagaggagaaaaaggagagactggc
aatgtaaactctgtcaaaggtgacagaggtgagaagggggattcaggcagtatagggttg
acaggtgctcctggacaaaaaggagagaagggacttggtggtgtgccaggtattgatggc
ttatctggagacaaaggagacaaaggtgaagcggggcgggctggtaatccaggactgcca
ggtccagctggacaaaagggaattcaaggagatgaaggcactgccggcacgcccggacca
aaaggtgttactggggaatcaggtataaaaggcgagaaaggatctccgggagccacaggc
gtggcaggtttggatggattccctggcaaacccggtgttccagggaaagatggtttgaga
ggactggttggtgcacccgggccgggcggaattaaaggcatcaagggggagagaggcctt
cccggattacctggggatgtgtttcacaaagaaggcttacagggtgaaaagggagatcct
ggaccacctggacctcctgggcccgagggccccccggggcctcaaggtcctcccggtcta
cagggtgaagctgggcaacccggagagtttggccagaggggaaagaaaggtgaaagtgga
ttgcctggagtggatgggcttcccggacccccgggtcctctgggtccacctgggccacca
ggtatccaaggacacactggacctcctggtctacccggtgagattggattttcgggcaaa
cacggagagcctgggaagcctggtcttcccggtaaagacggtctggatggacttcctgga
aatgacggtgccatggggcccaggggagagcgcggagccgatggctttgccggcaagccc
gggcctaagggtgacgacgggccacccggaccaagagggcctccaggggagagaggagaa
gccggttcccctgggcaacaaggtggtgatggagtacgaggagaccggggtattccggga
gaaagaggacaggatggacccctcgggcccaagggtgaaaagggcgacaagggtgaagtg
ggagctcggggactgcctggcattccaggaaatgtggcaaatgtcatccctgagcctggt
gaacctggaatacctggagagaagggagcgaagggggatcaagggagcccaggagagacg
ggtcaaagagggctacctggtgaacaaggcttcaagggaccagctggaccagcgggtcca
aaaggtgaacctggacttaagggagagactggacgagttggagaccctggtccacctggc
ctagctggtcctcaaggtcctcgtggattaccagggaatgtgggcataccagggatcatt
gggcctcccgggccagccggacaaagaggagacaagggtgaacaaggtaaaccaggacaa
gcaggtccttcaggcccacccggagatcccggattgactggaccccctggaccaccagga
aagggcaaagacgggcaaaacggggagaccggaccacaggggattcaaggtcccccgggg
cccaagggccaaccaggatcgcgaggggaaccggggttaccgggggacaggggttctgca
ggagaaggcaaagtgggacaacaggggcctccgggaaataatggcttacccggacctccg
ggcttaaggggtctgccgggagtcgccggtcctcagggcccagcaggacataatggttta
ccaggcaggccgggagaaaagggatcaccaggagagcctgggaaggcagcagacctctcc
gacctaaatctgaaggacgtttgctcggactgccctgctgggccacctggacagcccggt
ctcccaggagtcccaggggacaaaggacaccaaggacctcccgggaaaaacggtcaagat
ggttaccaaggcccgccaggagcagccggagctcaagggccccctggatccgatggagga
aagggtataaaaggtgatcgaggaccagctgggggccctggagagaaaggagacaagggt
cacccgggacctcctggtcatccaggtacccctggcttaatgggtacacctggtaacgat
ggacagcctggctctgtcggccccccagggccccctggagaaaagggcaaagagggtctc
aaaggaatccagggaccaccgggtcttcctggcttgatcggccagcctggcaaaatggga
aaagatggcagaccgggtgaaacaggagaacctggcaagcaaggtgaacctggaccagca
ggaaacccggggctcaggggactcccgggctttaagggccacagaggagaatctggagcc
ccaggacctaagggagaagatggaaagcctggatcagctgggcatgacggcaaacctggg
aaggagggccctatgggacctccaggcagagaaggaatcagtggaccaagtggagattcg
ggcaagccaggtgaaccagggccgtcgggaaaagcgggtctacctggatctcctggtctt
agaggagacaagggagaggccggcaacccaggattaccaggctttagtgggcctaaaggc
ccctcgggtccacccggtccaattggcccagaaggaaagcaggggatgccaggcagagtt
ggggatcgtggcctcaaaggagataagggagactcaggcgtgaagggagataaaggaact
tcaggagatccaggtatgcctggaaaccctggaccccccggcagaaagggccacacaggg
atgatgggcatgtcaggaccaccaggggaaataggacctcccgggccacaaggagtttca
ggaaaccccggtctcccaggccaaaggggagagtcggtatcactggagcagatgagacgg
ctcatccaggaggagctggccaagcagttagacgcaaaaatggcttacctcatggctcag
atgcagccagcccatgtgaagagtacagcgggacgtccaggacctccaggccctccaggt
aaggacggcggttccggacgacctggcccccctggagagcccggtatgcctggacagaat
gggggagaaggacccaggggacccgtgggccctaaaggtgagaagggaacaagaggagaa
aagggagaacctggtattggcgaaagaggagagcaaggaccctctgggccgataggtccg
gctggtctccccggttacggtaaagacgggagcccgggacaagccggggcccagggagag
ccaggaaaccccggcccccacggtcagcccggacctccaggccctactggccaatgtgac
cccacccagtgtgcctactacgccagcctggcacagagaccccacaccaaaaatgtcaag
gggacttaa
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