Etheostoma spectabile (orangethroat darter): 116701245
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Entry
116701245 CDS
T08457
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04518
Integrin signaling
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116701245
04518 Integrin signaling
116701245
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116701245
09142 Cell motility
04820 Cytoskeleton in muscle cells
116701245
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
esp00535
]
116701245
Proteoglycans [BR:
esp00535
]
Extracellular matrix (ECM) proteoglycans
Others
116701245
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
116701245
NCBI-ProteinID:
XP_032390735
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All DBs
Position
14:complement(21267586..21308345)
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AA seq
949 aa
AA seq
DB search
MAFPNSGLKRERPWHLSVSVCSPVCVALLSLLLAPALGQLDFNRLDGDTVCPPIRSGQDD
LPGFDLITQFQLDMLSLNGVRKVDGSTALQVAYRLDREANFQIPTMLNFPRGFPDEYSFM
VTFRMIKNTVNKVWNVWQVVDEDGYKQAGLRLNGDQLSLEYFLMGADGNLQTVTFPGLSV
LFNTKWHKVMIGVERDQVTLYVDCQPVDQRPIKGKGPINTEGETLIGRLDADPDASVVFE
LQWMLIHCDPKRAQRESCNELPATEMYANAEPDKSIQGPPGAPGPEGPRGPAGENGRDGR
DGLPGSTGSPGNPGSKGEKGEIGLPGQRGLPGLPGAGGSSGPMGPRGPVGERGLPGFPGP
PGPAGPASEGPAGPPGKPGIPGDEGNIGPEGQPGPRGKPGTSGPAGPPGPPGPAGPPGAS
NEGSGEPCPAACPAGPRGLAGLPGMKGHTGLPGEPGKDGEPGAKGDAGEQGPQGPMGRMG
DDGQRGPIGFPGSTGEKGDRGPPGFNGVPGPTGPPGAPGVEGIRGRQGLEGAKGDEGAVG
PQGEQGPAGEKGDVGEPGKDGLDGLPGVDGAKGEAGTAGASGVRGIVGIPGLPGKQGVVG
PTGAKGDTGAEGPVGPVGLPGKTGESGNDGQDGKPGSKGSTGERGKQGPVGPAGPPGIQG
DKGDKGSIGAMGLKGHTGHKGDQGPMGPMGPKGSLGDTGIAGDPGVKGDQGPPGVTGIKG
ERGEKGQRGATGDEGRPGQPGHSGLSGPMGARGLEGEPGVPGSPGPRGLPGPKVNDEKLR
EMCSAVVEEQLAEFMKEFLKRPAAIGAPGTPGPVGPPGPPGPIGVAGAAGSPGPAGAKGH
PGFFGLPGLPGSKGDAGEKGDKGDKGVDGVGIKGSPGEPGAPGAPGAPGIAKDGKNGDRG
ETGSPGVPGAAGPKGASGPPGLCDPSTCIGRLPPFYMVSGKKSAGYRNP
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcctttcccaactctggtttgaagagagagagaccgtggcatctatcagtgtcggtg
tgctcccccgtctgcgtggctctcctgtccctcctcctcgccccggcacttggacaacta
gacttcaaccgattggatggcgatacagtctgcccaccaataagaagtggccaagatgac
cttccaggttttgatctgatcacccagttccagctggatatgctctctctgaacggtgtg
aggaaggtggacggctccaccgccctgcaggtggcctaccgccttgacagggaggccaac
ttccaaattccaaccatgctaaacttccctcgcggcttccccgacgagtactccttcatg
gtgactttccgcatgattaagaacacagtgaacaaggtgtggaacgtctggcaagtagtg
gacgaagacggctacaaacaagccggactgagactgaatggcgaccagctgtctctggag
tacttcctgatgggcgccgacggcaacctgcagactgtcaccttccccggcctttctgtg
ctcttcaacaccaagtggcacaaagtgatgattggcgtagagcgcgaccaggtcactctg
tacgtggactgccagcctgtggatcaaagacccatcaaaggcaaaggccccatcaacaca
gagggagaaactctcattggcaggctggatgctgaccccgatgcctctgtagtgtttgag
ctccagtggatgctgatccactgtgacccgaagagggcccagcgagagagctgcaacgag
ctgcctgccaccgagatgtatgccaatgctgagcctgataaatcaatccaaggcccccca
ggagcccctggcccagagggcccccgagggcccgcaggagaaaacggcagagatggaaga
gatggtcttcctggttccactggcagtccaggcaatcctggcagcaaaggggagaagggg
gaaatcggtcttcctggacagagaggcctgcctggccttccaggagctggtggttcttct
ggtccaatgggtccccgtgggcctgtaggggagagaggacttcctggctttccaggacct
ccaggtcccgctggcccagcaagtgaaggacccgctggaccgccagggaaaccaggaatc
ccaggagatgagggaaacatcgggcctgagggtcaacctggacccagagggaaacccggc
acctcagggcctgctggccctcctggtccaccagggccggcggggccgcctggtgccagc
aatgagggaagcggggaaccttgtcctgctgcctgccctgctggcccacggggactggct
gggctaccagggatgaagggacacacaggtttgcctggtgagcccggaaaagatggggaa
cctggagcgaagggagatgctggagagcaaggtcctcaggggccaatgggtcgcatggga
gatgatgggcaaagaggacccattggattccctggaagcacgggggaaaagggagacaga
ggtcctcctggtttcaatggcgttccaggacctactggcccacctggtgctcctggtgtg
gagggaatccgtggacgtcagggtttggagggtgccaagggcgacgagggagctgtggga
cctcaaggagaacagggtcctgcaggggaaaagggagacgttggagagcctggtaaagac
ggcttggatggacttcccggagttgacggagccaagggagaggctggtactgctggagct
agtggtgtcagggggattgtgggtattccagggctgccagggaagcagggagtagttgga
cccactggtgcaaagggggatactggtgctgagggacccgtcgggccagtcggactccct
ggaaagactggggagtctggcaatgatggacaagatgggaaaccaggaagtaaaggatca
accggtgaaagaggaaaacaagggccagttgggcctgcaggtcctccaggcatccagggt
gacaaaggagataaaggtagcattggtgccatgggactgaagggtcatactggacacaaa
ggtgatcagggacctatgggaccaatgggaccaaaaggaagtttgggggacacaggcata
gcaggagatcctggggtcaaaggagaccagggccctcctggtgttactggaatcaaagga
gagcgtggagaaaaaggccaacgaggggctacaggagacgagggacgaccaggccagccg
ggccactccggtttgtctggtccaatgggagctcgagggctggagggagaaccaggcgtt
cctggatcaccaggccccagaggtctgcctggcccaaaagtgaatgacgagaagcttcgg
gaaatgtgctcagctgttgttgaagaacaattagcagagtttatgaaagagtttctgaag
aggccggcagccattggtgcccctggtactcctggaccggtaggacctcccggcccccct
ggaccaattggagtggcaggagcagcagggtctccaggtccggctggtgccaaaggccat
ccgggcttctttgggcttccgggcttaccgggcagtaaaggtgatgctggggagaaggga
gacaagggagacaagggagtggatggtgtaggaatcaaaggaagcccaggcgaaccgggt
gcaccaggtgcaccaggcgctcctggcattgcaaaggatggcaagaacggagatcgcggt
gagacaggaagtcctggtgtcccaggagcagccggtcctaagggagcttcaggtccgccc
gggctttgcgatccatcgacctgtatcggcagacttccacctttctacatggtcagcgga
aagaagtccgccggctacaggaacccgtga
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