Etheostoma spectabile (orangethroat darter): 116701498
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Entry
116701498 CDS
T08457
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116701498 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116701498 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116701498 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
esp00535
]
116701498 (col9a2)
Proteoglycans [BR:
esp00535
]
Extracellular matrix (ECM) proteoglycans
Others
116701498 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116701498
NCBI-ProteinID:
XP_032391121
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All DBs
Position
14:8736137..8753155
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AA seq
691 aa
AA seq
DB search
MAALSALLKTWVILQTLCLALAQVRGPPGPQGQPGPPGSSGMPGSDGIDGEKGPPGPPGP
PGLKGEPGEPGPDGAPGENGIDGLIGAKGDRGPIGRPGPKGQPGPSGEPGPPGAGLPGLA
GAAGPVGLPGEIGPNGPKGIMGPSGPPGLPGPPGKPGPPGKFIGGEEGSADFQCPLNCPA
GQKGPQGLQGVKGHKGRAGVLGEPGSIGKLGPKGEVGISGEQGIPGPPGPMGLRGYPGMM
GPKAEAGPRGYKGINGPVGIPGPPGEEGPKGPPGEAGDKGDKGSQGIQGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGSPGQDGRPGPPGPQGTAGLPGSPGSKGGPGAKGEPGPRGHI
GMSGAPGPLGEPGLPGLAGMEGVPGPKGDRGQRGEVGPQGIIGKAGNKGERGPIGVPGAQ
GLSGTKGDKGFQGKVGSKGDDGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDPGHNGPT
GDSGKPGDMGPPGLPGPRGLNGERGVPGMPGIQGSLGRDASDQHIIEVVLKMLQEKLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGSPGPQGPHGLPGARGIPGIIGGHGQIGNTGLKGKR
GAKGDRGDPGKPHQGPPGPPGIQGPPGVDGVARDGRHGERGPQGSAGESGRPGKAGPVGL
PGFCEAAMCLAASAYTSPRLQEAGTIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagacctgggtaatactgcagaccttgtgcctggct
ctggcccaagtgaggggtccacccggacctcagggccagcccggcccaccaggctcctct
ggcatgcctgggtcagacggcattgatggagagaaaggaccacctgggccccctggtcca
ccaggactaaagggggagccgggagagccaggtcccgatggagctccaggagagaatggc
attgatggtttgattggagcaaagggggatcgaggtcctattggacgccctgggcctaag
ggtcaacctggaccaagtggcgaacctggacctcctggagccggccttccaggactggct
ggcgctgcagggccagttggtcttccaggtgaaattggaccaaatggaccaaagggtatc
atgggaccatctggacccccaggacttcccggacctcctggcaagccaggtcctccaggg
aagttcatcggtggagaagagggaagtgccgacttccagtgtcctcttaactgtccagca
ggacaaaaaggcccccagggactgcagggagtcaagggacacaaaggacgtgctggggtt
ctcggagagcctggtagcataggaaaattgggtcccaagggagaagtgggcatctctggg
gaacagggcatcccaggacctccgggtccaatgggtctgaggggttatccaggaatgatg
ggtcctaaagcggaagcagggcctcgtggttacaagggcatcaacggacctgtaggaatt
cctggacctcctggtgaggagggacctaagggaccacccggagaggcaggagacaaggga
gacaaaggcagccaaggtatccagggcccacagggtgcagttggcaaaaagggagagaat
ggtctgccgggtattgatggaaaagatggcacacctggcattcctggaatcaagggcagc
cctggccaggatgggaggcctggtccgcctggtcctcagggaacagcgggattgcctggc
agcccagggtccaaaggtggacctggagccaagggcgagcctggacctaggggtcacatt
ggcatgtctggtgcccccggacctctgggggagcctggtcttcctggtctggctggtatg
gaaggagtccctggacccaagggtgacaggggccagcggggagaagttgggccacaggga
ataattggcaaggctggaaacaaaggagagagaggaccaatcggtgttccaggggcccag
ggtctcagtggaaccaaaggagacaagggcttccaaggaaaagtcgggtcaaagggagac
gatggtgaccccggggttgagggattggctggcgagaaaggtgaaaagggtttgtctggt
gaacccgggcccaaaggacagcaaggaattaggggtgatccaggacacaatggacctact
ggagactctggtaaacctggagacatgggacccccaggactgcccggtcctaggggactc
aatggagagcgaggagtaccaggcatgccaggcattcagggatcactagggcgcgatgca
tctgaccagcacatcattgaagtggtgttgaagatgttgcaggagaagctagctgcggtg
gcggtgagcgccaagagggctgtgctcggtggagccggtgtgatgggacctcccgggccc
cctggcccccctgggtcacctggtcctcaggggccacatggcttacctggagctcgtggc
attcctggcatcattggaggacatggacagattggaaacacaggacttaaaggaaagaga
ggggcaaagggagatagaggagatcctggtaaacctcaccaaggaccaccaggaccccca
ggaatacaaggtccccctggtgttgacggtgtggctcgggacggtaggcacggcgagaga
ggacctcagggatcagccggagagtccggtcgtcccggtaaggcgggaccggtaggtctc
ccaggcttttgcgaggcggcgatgtgtctggctgcgtcggcgtacacctccccgaggcta
caggaggcggggacaatcaaaggacccaatgtttag
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