Etheostoma spectabile (orangethroat darter): 116701729
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Entry
116701729 CDS
T08457
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116701729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116701729
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116701729
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116701729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
116701729
NCBI-ProteinID:
XP_032391487
LinkDB
All DBs
Position
14:23645812..23680041
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AA seq
949 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKNQKRIYCQLHNAANANQKEKYEADLKKEI
KKLQRLRDQIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQ
KVDPAQKEKEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEDRIEELKTFIE
KHRHHIRMLETILRMLDNDSIQVDAIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEEI
PQALIATSPPGNSNLEDEIFQNSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDS
EVGQSPVKNGNPSSSLSSSSSSSSSSSSSSSCSSSSSIPGLTSSSLVSMATITGGGLSGS
GGLHGSLGGLLSNTSAGSYSSATQQQPHPSAQQQQQAKNLVGPASSAPISIPNSSTNSHL
MSSAPSPPNAITQGLFTSSSQAQSLSGPTPTSNSLGLSLGLSLGKGGMSSCITTSPMSGS
LGLSGMPASLSSMASLLSGSTPAPYAQAAASGAIGSGLPGSLGGIGINPTTTHSTVGSIG
SGSITVGGPTSSTGGLLGPAPGLTNVGSGMLGLGSGQSGMQGSSLVSLSPVGGLAPGSGV
GVIGSNGGSSGSAGSGVVGVNLSLSVRPPSQQKQNGSTSYSAVVADSTTDSALTSASQSQ
SSQSSSLTSPANQPKDTGSSLLGSICLSSSSPSPAFYSEAKAVSGGSLLNGPLSYSQSSD
SMKPQEPLSSLKSMAERAALSSGMEGDVSSLHLTPVSVSCLPSDIFPSSTTVPSGPPSAP
QLSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPCP
TLPFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMM
WFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggggaaatagatcgatgtctgaaaaaagtagcggaa
ggagtcgaacagtttgaagacatttggcaaaagaatcagaaaaggatttattgccaactt
cacaatgcagccaacgcaaaccagaaagagaaatatgaagcggacctcaagaaagagatt
aaaaagctccagcgtcttcgagaccagatcaagacgtgggtggcatccaacgagatcaaa
gacaaaaggcagctagtagagaaccgcaaactcatagaaacgcaaatggagcggttcaaa
atagtggagagagaaaccaagacaaaggcgtactctaaagaaggtttgggtctggcccaa
aaggtggacccggcccagaaagagaaggaggaggtcggcacgtggctaacgaacacgatc
gacacgttgaacatgcaggtggaccagtttgagagcgaggtggagtctctttcagtgcag
acgaggaaaaagaaaggagacaaagaggaccggattgaggagctgaagacattcatcgaa
aagcatcggcaccacatccggatgctggagaccatcctgaggatgctggacaacgactcc
atacaggtggacgccatcaggaagatcaaggacgatgtggagtattatctagactcgtcg
caggatccagactttgaggagaatgagtttctgtacgacgacctggacctggaagaaatc
cctcaggcgctgatcgccacctccccgccgggaaactccaacttggaggacgagatcttc
cagaactccagcagcacgcccacctccaccacctcatcttcacccatccccccttcacct
gccacttgcactacggagaactcagaagatgacaagaagagaggacgttcaaccgacagt
gaagtcggtcagtcacctgtgaagaacggaaacccctcttcctcgttatcctcttcctca
tcctcctcttcttcctcctcctcgtcctcctcctgctcttcttcatcctccatcccgggc
ctgacctcatcctcactcgtctctatggcgaccatcacggggggaggactcagtggctct
gggggtcttcacggcagcttggggggtctcctctccaacacttcggccggcagctacagc
agcgccacccagcagcagccgcacccgtcggcgcagcagcagcaacaggccaaaaactta
gttggccccgcctcctcggctcctatctccatccccaactcctcgaccaacagccacctg
atgtcctccgccccttctccccccaatgccattacacaggggctcttcacttccagctcc
caggcccagtctctgtcggggcccacgccgacctccaacagcctcggcctcagcctcggc
ctctcgctggggaaagggggcatgtccagctgcatcaccaccagccccatgtccgggagc
ctcggcctgtcagggatgccggcgtccctgagcagcatggcgagcctcctgtccggctcc
acccccgcaccttacgcccaggcggccgcatcgggagcgatcggctccggccttccaggc
tctctgggcggcatcggcatcaatcctaccacaacccacagcacagtgggctccatcggc
agtggaagcatcacggtcggtgggccgacgtcctcaacgggaggtctgctgggcccggcg
ccggggttgaccaacgtcggctctggcatgctgggtttgggttctggccagtcggggatg
caggggtcttccctggtgtcactgagcccagtcggaggcttagcgccgggtagcggagtg
ggagtcatcgggagcaacggaggcagctctggatcagcagggagcggagtggtgggagta
aacctgtcgctctccgtcaggccgccgagccaacagaagcagaacggtagcaccagttac
agcgctgtggtagcagacagcacaacagactccgccctcaccagtgccagccaatcacaa
agcagccaatcctcgtctttgacctccccagccaaccagcctaaggacactggttccagt
ttactgggctctatttgtctgtcgtccagctccccgtcgccggccttctacagcgaggcc
aaagcggtgagcggcggcagcctgctgaacgggccgctgtcctactcgcagtcctccgac
agcatgaagccccaggagcctctgagcagcctgaagtccatggccgagcgagcagcactc
agctcagggatggagggtgacgtgtcctccctgcacctcaccccagtctccgtctcctgt
ctcccttcagacatcttccccagcagcactactgtcccctctggcccgccgtcggcgcct
cagctctcgctgtcagaggtcagcatccccccgtcactgggcgtctgcccgctggggccg
gttcccctgtccaaagaccagctctaccaacaggccatggaagaggcggcgtggacgcac
atgccccacccgtccgactccgagaggatcaggcagtacctgatgaggaacccgtgcccc
accctgcctttccaccaccaggtgccaccgccccactccgacactgtagagttttaccag
aggctttccaccgaaaccctcttcttcatcttttactacctggagggcacgaaggcccag
tatctggcagccaaagccctgaagaagcagtcatggaggttccacacaaagtacatgatg
tggtttcagaggcacgaagaacccaagaccatcacggatgagtttgagcagggaacatac
atttactttgactatgagaaatggggccagcggaagaaggaaggcttcacgtttgagtac
cgctacctagaagaccgagacctccagtga
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