Etheostoma spectabile (orangethroat darter): 116702179
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Entry
116702179 CDS
T08457
Name
(RefSeq) polyadenylate-binding protein 1A-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03015
mRNA surveillance pathway
esp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116702179
09123 Folding, sorting and degradation
03018 RNA degradation
116702179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116702179
03041 Spliceosome [BR:
esp03041
]
116702179
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116702179
mRNA cycle factors
Stress granule specific factors
116702179
Spliceosome [BR:
esp03041
]
Complex C
Other components
Complex C specific factors
116702179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_5
RRM_7
RRM_occluded
RBD_RDR6
RRM_3
YflT
HTH_58
POP1_C
Motif
Other DBs
NCBI-GeneID:
116702179
NCBI-ProteinID:
XP_032392222
LinkDB
All DBs
Position
14:complement(595604..603718)
Genome browser
AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYVKNFGEDMDDEKLREVFSKYGNSMSIRVMIDDSGKSRGFGFVSFER
HEDAQKAVDEMNGKEFNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFTPFGTITSAKVMLEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPAAGQITQLRPSPRWATQGVRPQHFQNIPGTMRPSAPRPQTFGAMRPATQVPRMMSA
QRVAAQTMGPRPATAAAAAAAPVRGLPQYKYAAGVRNPQQHMPAQQQVTMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEATQKTVPNSAGVQSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagtgctcccagttatcccatggcctccctgtatgtcggggatctgcatcaa
gatgtgaccgaggccatgctgtacgagaaattcagcccagccggagctatcctgtcgatc
agggtctgtagggacatgatcacccggcgttcccttggatacgcctatgtcaacttccaa
cagccagcggacgccgagcgtgcactggacactatgaactttgatgtgatcaaggggagg
cctgtgcgaatcatgtggtcgcagcgggatccgtcactgagaaagagcggtgtgggaaac
atcttcatcaagaatcttgacaagtccattgacaacaaggctctgtacgacaccttctct
gcttttggcaacatcctgtcatgcaaggtggtttgtgacgagaatggctctaaaggctac
ggctttgtgcattttgagactcaggaggcagccgaacgagccattgaaaaaatgaatggc
atgctgctgaatgaccgaaaagtatttgtaggtcgcttcaaatctcgcaaagagcgcgag
gctgagctgggtgcccgagccaaggagtttacaaatgtctacgttaaaaactttggtgaa
gacatggatgatgagaagctgagggaagtcttcagtaaatacggaaactccatgagtatc
cgagtcatgatagatgacagtggaaagtctcgaggctttgggtttgtcagctttgagaga
catgaggatgcccagaaggcagtggatgagatgaatggaaaggagtttaacggcaagctc
atctacgttggccgtgcccagaagaaggtggagcgacagacggagctcaaacgcaaattt
gagcaaatgaaacaagaccgcatgactcgctaccagggtgttaacttatatgtcaagaac
cttgatgatggaattgacgatgaacgtttgcgaaaggagttcacaccgttcggcaccata
accagtgccaaggtcatgttggagggtgggcgcagcaaaggttttggctttgtctgcttc
tcgtccccagaggaggccaccaaagcggtgacagaaatgaatgggcgcattgtagcgact
aagccgttgtatgtggccttggcccagcggaaagaggagcgtcaagcccacctgaccaac
cagtacatgcagcgcatggccagtgtgcgtgcagtaccaaacccagtcatcaatccctat
caaccagccccaccctctgggtatttcatggcagccatacctcaggcccagaaccgtgct
gcttactacccagctgctgggcagataacccagctccgcccgagcccacgctgggccacc
caaggtgtccggccacaacacttccaaaacatcccgggtactatgcgtccctcagcacca
cgccctcagacctttggtgccatgcgtccggcaacccaggtgccccgcatgatgtctgca
cagcgtgtcgcagctcagaccatgggcccccggccagccactgcagctgctgcagcagcc
gctcctgtgcggggactccctcagtacaaatatgccgcaggtgtccgcaatccccagcag
cacatgcctgctcagcaacaagtcaccatgcagcagcctgctgtccatgttcagggacag
gagcctctgacggcctccatgctggccgctgcgccaccacaggaacagaagcagatgctg
ggtgagcgtctgtttcctctgatccagaacatgcacccaagcctggcagggaagatcact
ggcatgctgctggaaattgacaactcagagctgctccacatgctggagtccccagagtct
ctccgctcaaaggtggatgaggcggtggctgtgcttcaggcccaccaggcaaaagaggcc
acccaaaagaccgtgccaaattcagctggtgttcagagtgtctaa
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