Etheostoma spectabile (orangethroat darter): 116702319
Help
Entry
116702319 CDS
T08457
Symbol
tnrc6a
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116702319 (tnrc6a)
03036 Chromosome and associated proteins [BR:
esp03036
]
116702319 (tnrc6a)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116702319 (tnrc6a)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116702319 (tnrc6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
116702319
NCBI-ProteinID:
XP_032392374
LinkDB
All DBs
Position
15:complement(3757516..3796073)
Genome browser
AA seq
1893 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLEHPGLDSQYEPSPWSSGSPCSSDGNSNWGKVLVEGSTDKPNPP
SSTNSSVWPPSSSSFSCSSSSSSSGCGSGSDPELASECMDADSSSSIGSEKNLTAVTTVM
MMSNASSSVSSTASPSSSMTTSAMIVSVSVNGDSNGNSRQVIGGGMGTTSGANNGNNNIT
GSSHYSVAGSSSIGSNNMGNHNNKPVINNSSVWGSNMIPTGGSTSYINVGLNPNTLSPNA
NHGAWSQNPSPVSQGQRPPQAQGMSSKLGIAPQQGSAPGWGGMAAPTSSIMEDTEVNNGT
ASSNVLGSSNSGNGGLQPTNLNTESNGPNNTIMMNTTTTTTTTTTNATMTSSSPNSTASP
QLSGDCSWGSIRGGNGGPLANGNPSSAPQHPQGEQGGPGTFGTPWGATTYPGDKGPPNAD
TVNTQNPALMQAGNPQISSAAYKSNNNHNNTGAPRWDQGPTNNPNQTQSNLSWGIGSNQI
PSSAGQTPGNGNQTTMGPPAGLPRPWGSSASSSSSSSSSSSTSNNKMSNGEWGSTTPGNN
PSDAGSHKGNSANNGWKSLEDDAMGIGGGGVGGGGSHGLGSVTGGWGRTGGSEGSVESSG
GRSSSDRDGSQPKGGNRRKVVPPATILPAVLQADVDPRVLSNTGWGQTPIRQNTTWDVNS
PANNRLQVPNRDERKQSSGGSGWGTATPAAPSQTSGGWGGGPGSSGPGTGVSDWGERPPS
GWDSKVPASGGGGHNAWNDGSSYKGSNNGNTWSNNINKDDRSSTWTNVPKPHQGWGSNTG
NGSEGWGNGGDGSRTGGNNHWGEPQKGASSVGWDSDSDRSGSGCWSEQSRTNTSSSNTWI
GSGGSNTPDQSTPNPGSNWGDSVHKPNPSNGNSQGWGEPMKNNHGAQNWGEPNPKPSNEW
GKGLESNFSKGNPAPNKPTGWLGGPMPTAGQKEEVATGWEEPSPESVRRRMEIDDGTAAW
GDPGKYSGGSVNMWNRTAQSDKEAVGPSTQHQSHPARSTMHPPPQPMQPHTQDKSSSSIW
GETYPQKKESSTWEPTPAPPVKVDNGTSAWGKPTEASTTWEEPSRDNRESGPGWGGQHKS
APAPKPMETWGGEEAAMGNSWDQEEEVEIGMWNNSQQDNRSHDQNTWNYKHKGSNKITKP
VNKQDEPWMKPFINQFNSMNFSRDSPDDSMKTGAGMVQDKRMDMGSMGDFNGVMGKNPGS
RHQLHKESAMDRNPYYDKLSVSASAYNNPASDELSSNQSMSFPPSNSAQPIPCLDSGLSP
AHSIPGGARQNVNPMMGGSSVAQGRGGPQSQVPSQPNLRNQVPPPILPSQVPPSLLKYPG
GNGGLNPLFGPQQVAVLNQLSQLNQLSQLNQINQLQRLLLQQQQQQQQQQKTQSQRAVPV
GRPTEQTRPIGSSPSMMPPPRHLDPSLLKHAPPHKPYLDNYLSHNTPEMQKDAASLGSFN
FPLSLNSNLNVPLDMGGGCSGGGALSYKEPPQSRLKKLWATDPLEQNSKPGAMSSGLRLE
DPPFYDFLSPGPSPLSPPGQSMGSVGDGWPPRANSPPPHGNTVTWPPEFRPGEPWKGYPN
IDPETDPFVTPGSVINNLSINTVRDTDHLRDRNNGPSSSLNTTMPSNSAWSSIRASSHSG
SLTSTAQSTSARPSESKWSPGGGSVSNSSLAHELWKVPLPPKALSVAAPFRPPPGLTSQK
PNASTSGWDGSALRLGGWGSSESRYTPGSSWSDSSSSGRTQWLVLKNLTPQIDGSTLRTL
CMQHGPLITFHLNLPHGNAVVCYSSKDEAAKAQKSLHMCVLGNTTILAEFASEEEINRFF
AQGQSLATPSSGWQTIGSSQSRMDQSHPFPSRAPEPNQWNSSDLRSSSLWGGPNYSSSLW
GSPSGTEAGRISSPSPMSSFLPVEHLTGGADSM
NT seq
5682 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggattccgtcagccactcccctaatcaaacaggtctggagcatcct
ggcttagactcccagtatgagccttccccctggtcctctggctctccctgcagcagtgac
ggcaacagtaactggggcaaagtcctagtagaaggaagcaccgacaaacccaacccccct
tcttcaactaactcttctgtctggcctccctcctcttcttcattttcttgctcctcgtcg
tcttcctcttctggttgcgggtcaggatcagaccctgagttggcatcagaatgcatggac
gcagactctagctcctcaatcggctcagagaaaaacctcaccgctgtgacgacagtgatg
atgatgtcaaatgcttcttcctctgtgtcttctacagcttctccctcctcctctatgaca
acttctgccatgattgtcagcgtttcagtgaatggagacagcaacggcaacagtcgtcaa
gtaattggtggagggatgggaaccaccagcggtgcaaataatggaaacaataacatcacc
gggtcctcccactactccgtggctggttccagcagtattggcagcaataatatgggtaac
cacaacaacaaacccgtcatcaataacagtagtgtatggggcagcaacatgatccccacc
ggcggaagcacctcctacatcaatgtagggttaaacccaaacactttaagcccaaatgcc
aaccatggtgcctggtcgcagaatccaagcccagtgtcccagggccaacggcctccacag
gctcaggggatgagttccaaactgggtatagctccccaacagggctccgctccgggctgg
ggtggcatggcagctccaaccagcagtataatggaagacactgaggtgaataatggtaca
gcaagcagcaatgtgttaggaagcagcaacagtggaaatggtggcctacaacctaccaac
cttaacactgaatccaatggaccaaataacactattatgatgaatactactactactact
actactactactactaacgccacaatgacctctagttcaccaaactctacagcctcaccc
caactcagcggggattgttcctggggctctattagaggagggaatgggggtccgctggcc
aatggaaacccctcatcagccccccagcacccccaaggagagcaggggggtcctggaacc
ttcggtacgccttggggcgcaactacctaccctggagataaaggccccccgaatgcagac
actgtgaacacccaaaaccctgccttaatgcaggcagggaacccccaaatctcctctgct
gcttacaagagtaataataaccacaataacactggggctccacgctgggaccaggggcca
accaataacccaaaccagactcagagcaacttgtcttggggtatcggctcaaatcaaatc
ccaagctctgcaggccaaacaccaggaaatgggaaccaaactacgatgggccctccagca
gggttacctcgcccttgggggagcagcgcgtcatcctcgtcctcgtcctcatcatcctct
tccacatctaacaacaagatgtcaaatggagaatggggatcaacaactcctggtaacaac
ccttcagatgctggaagtcataaaggaaactctgccaacaatggctggaagagcctggag
gatgacgccatgggcataggaggtggaggagttggaggaggtggaagccatggcttgggg
agtgtcactggaggctggggtcgaactggaggaagtgagggaagcgtagagagctctgga
ggccgatctagctcagacagagacggcagccagccgaaagggggaaatcgcagaaaagtt
gtccctcctgcaaccatactcccagctgtgttgcaggccgatgtggacccgagggttctt
tccaacactggatgggggcagacacccataaggcaaaacaccacctgggatgtcaattcc
cccgctaacaatcgacttcaggttcccaatagagacgaaagaaagcaaagcagcggaggc
tccggatggggcacagcaacaccggcagctccctcccagacctcaggaggttggggtggt
gggccgggcagctcgggcccaggtacaggggtttctgactggggagagcgtccaccctct
gggtgggacagcaaagtcccagcgagtggaggaggtgggcataatgcctggaacgatgga
tccagctacaaggggagcaacaacggcaacacctggagcaataacattaacaaagatgac
aggtccagtacgtggactaatgtgcccaaacctcatcagggctggggttccaatactgga
aatggaagtgaaggatggggtaatggtggagatggttcaagaacagggggcaacaaccac
tggggggagccccaaaaaggtgcaagctcagtgggctgggacagcgacagcgaccggtca
ggctctggatgttggagtgagcaaagccgaaccaacaccagtagcagcaacacctggata
gggagcggaggatcaaatactccagaccagagcactccaaacccaggctccaactggggt
gactcagtacacaaacccaatcctagtaacggtaacagccagggctggggtgagccaatg
aagaacaaccacggagcccagaactggggcgagccaaatcccaagccctccaatgagtgg
ggaaaaggtctagaatccaacttctccaaaggcaatccagcccctaacaagcccacaggc
tggttgggaggccccatgcccactgccggtcagaaagaggaagtagcaactgggtgggaa
gagccttctccagagtctgttcgtcgtaggatggagattgatgatgggacagcagcttgg
ggagaccctggtaaatacagcggtggatctgtcaacatgtggaacaggactgcccaatca
gacaaggaggccgtaggcccatccactcagcaccagtcccacccggcacgcagcacgatg
catccccctcctcagcccatgcagcctcatacccaggacaaaagcagtagttctatttgg
ggtgagacttacccccagaagaaggaatcctcaacctgggaacctacccccgccccacct
gtgaaagtagacaacgggacgtctgcctgggggaagcccacggaagccagcaccacctgg
gaagaacccagcagggataaccgagagtctgggcctggatggggcggccagcataagtct
gctccagctcccaagcccatggagacatggggtggtgaggaggcagccatgggcaatagc
tgggaccaggaagaggaggtggagattggcatgtggaacaacagccaacaggacaacagg
tcccacgaccaaaacacctggaactacaagcataaaggctccaacaagataaccaaacca
gtcaacaaacaggatgaaccctggatgaaacccttcatcaaccagttcaacagcatgaac
ttctcccgagactctcctgacgactccatgaagacaggagcagggatggtgcaggacaag
cgtatggacatgggcagtatgggagacttcaatggagtcatgggcaagaacccaggctct
cgacaccagcttcataaggagtctgccatggatcgcaacccttactatgacaagctgtca
gtttccgcctctgcttacaataatccagcttctgatgagctctcctccaatcaaagcatg
agctttcccccttccaattccgctcaacctataccctgtcttgactctgggctgtctcct
gcccactctattcccggaggcgctcggcagaatgtaaatcctatgatgggcggcagcagt
gtagcacagggccgaggcggcccccaatcccaggtcccctcccaacccaacctccgtaac
caagtgcctccacccattctgccctctcaggtgcctccatcactgttgaagtacccagga
ggtaacggaggtctgaaccctctgtttggccctcagcaggtggctgtgctcaaccaactc
tctcagctcaaccagctgtcacagctcaaccagatcaaccagttacagcgtcttctcctc
cagcagcagcagcagcagcagcagcagcagaagactcagagccagagagccgtgcctgtg
ggacgaccaactgaacagacacgtcctattggttcatctccatcaatgatgccgccacca
cggcacctggacccctcactgctgaaacatgccccaccccacaaaccgtacctggataat
tacttgtcccacaatacccctgagatgcagaaggatgctgcttctcttggatccttcaat
ttccctttaagcttgaactctaacctgaatgtacccctggacatgggtggtgggtgtagt
ggtggtggagctttgagctacaaagagccgcctcagtccagactgaagaaactttgggct
actgaccctctggagcagaacagcaaacctggtgctatgtcgtctgggctgcgtctggaa
gaccctcccttctatgacttcctctctcctggcccatctcccctgagtccccccggccaa
tcaatgggctcggtgggcgatggctggccgccccgtgccaactcccccccgccccatgga
aacactgtcacctggcccccagagttccggcccggcgagccttggaaaggttaccccaac
attgaccctgagactgacccttttgtgacccccggtagtgtcatcaacaacctctccatc
aacaccgtccgtgacacagaccacctcagggacaggaacaacgggccatcctcatcacta
aacaccacgatgccttctaacagtgcctggtcatccattcgtgcctccagccacagcggt
tccctcaccagtacagcacaaagcacttcagccagacccagtgagtcaaagtggtctcct
ggcggcggttctgtgtccaactcctccctggcccatgagctgtggaaggtccccctgcct
cccaaggcgctgtctgtggcagccccattcagaccaccacctggccttaccagccagaag
cccaacgcttccacatccggttgggatggctctgccctgaggctgggggggtggggctcc
tctgaatctagatacacacctggttccagttggagtgacagcagcagctcagggagaacc
caatggcttgttctgaaaaatctcacacctcagattgacggctctaccctgaggaccttg
tgcatgcagcacggccctctgatcacattccacctcaacctgccacatggtaacgccgtg
gtatgctacagctccaaggatgaggccgcaaaggcccagaagagcctgcacatgtgtgtt
ttggggaacactactattctggctgagtttgccagcgaggaggaaattaatcgtttcttt
gcacaagggcagtcattggccactccctcctctggctggcagaccattggctcctctcag
agcagaatggatcagtctcacccctttcccagccgcgctcctgaacctaaccagtggaac
agcagcgatctccgcagctcctcactatggggcgggcccaactattccagtagcctgtgg
gggagccccagtggcaccgaggcgggtaggatcagcagcccttcaccaatgagctccttc
ctcccggtggagcacctgacagggggcgcggactccatgtga
DBGET
integrated database retrieval system
