Etheostoma spectabile (orangethroat darter): 116702360
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Entry
116702360 CDS
T08457
Symbol
smarca4
Name
(RefSeq) LOW QUALITY PROTEIN: transcription activator BRG1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116702360 (smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esp03021
]
116702360 (smarca4)
03036 Chromosome and associated proteins [BR:
esp03036
]
116702360 (smarca4)
Transcription machinery [BR:
esp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116702360 (smarca4)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
116702360 (smarca4)
Chromatin remodeling factors
BAF complex
116702360 (smarca4)
PBAF complex
116702360 (smarca4)
GBAF(ncBAF) complex
116702360 (smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
116702360
NCBI-ProteinID:
XP_032392427
LinkDB
All DBs
Position
15:24628421..24666579
Genome browser
AA seq
1643 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQDNMHQMHKPMEAMHEKGMPDDPRYAQMKGMGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMIPGGPSGPGSGPMEGSGDPNQGMGQPNRGGPQGPGG
PGGAGGGPGGAGGPAPFNQNQLHQLRAQIMAYKMLARSQPLPEHLQMAVQGKRPMPGMQQ
QPMPNMPPATGPGGGPVGGPGPAPANYNRPHGMVGPNMAPPGPAGVPPGMQGPPTNGPPK
SWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPPM
MLHQKQNRVTPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIE
LKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIE
QERKRRQKHQEYLNSILQHAKDFKEYHRSITAKLQKATKAVATYHANTEREQKKENERIE
KERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKKKK
KKKKKPETMEGGAPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGMEAPKAGQLEAWL
EMNPGYEVAPRSDSEESGSEEEEEEEEEEEEQPHSSATQAEEKKKIPDPDSEEVSEVDVL
HIIEHAKQDVDDEYGNASFNRGLQSYYAVAHAVTEKVDKQSTLLINGQLKQYQIKGLEWL
VSLYNNNLNGILADEMGLGKTIQTIALITYLMEYKRLNGPFLIIVPLSTLSNWVYEFDKW
APSVVKVSYKGSPAARRAFIPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHR
MKNHHCKLTQVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNA
PFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQR
VLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGY
SGGIVSGPDLYRSSGKFELLDRILPKLRATDHKVLLFCQMTSLMTIMEDYFAYRNFKYLR
LDGTTKAEDRGMLLKTFNDPASQYFVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQ
AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGCERRA
FLQAILEHEEQDEVGARGGCRTRGAWEEDEVPDDETVNQMIARSEEEFEQFMRMDLDRRR
EDARNPKRKPRLMEEDDMPSWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTE
KQWLKAIEEGNLEDIEEEVRHKKTTRKRKRDRDHDGGPATPSSSSGRGRDKDEEVKKAKK
RGRPPAEKLSPNPLSLTKKMKKIVDAVIKYKDGNGRQLSEVFIQLPSRKELPEYYELIRK
PVDFRKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQK
IEKEDESEGEDSEEEDDDLDEGSESESRSVKVKIKLSRKEKGERGGKGQRRRGRGARAKP
VVSDDDSEEEQEEERSASGSEED
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctgaccccccgatgggagggacacctcggcctggaccctccccaggcccg
gggccatctccgggaggcatgatgggcccgagccctggtccctctccaggctcagcccac
agcatgatggggccgagcccgggccctcctggatctggacacccccaccctccacaggga
ccctcaggatatcctcaggacaacatgcaccaaatgcacaaacccatggaagccatgcat
gagaagggaatgcccgacgacccccgctacgcccagatgaagggcatgggcatgagacca
ggggggcacagtgggatgggcccccctcccagccccatggaccaacattcccaaggttac
ccctctccgttgggaggctcggagcacgcacccagccctgtcccagccaacggccctccc
tctggccccatgatccccggaggaccctccggccccgggtctggccctatggagggcagc
ggggaccccaaccaagggatgggtcagcctaaccgcgggggtccccagggtccgggtgga
cccggcggtgcgggcggcggaccaggcggtgcgggcggacccgctccattcaaccagaac
cagttgcaccagctcagggcccagatcatggcctacaagatgctggcccgcagccagccc
ctacccgagcacctgcagatggccgtgcaggggaagaggcccatgcccgggatgcagcag
cagcccatgcccaacatgccgcctgctacggggcccgggggtgggcccgttggggggccg
ggaccagctccggccaactacaacagaccccacggcatggtaggtcctaatatggcgcct
cctggccctgcaggagttcccccaggcatgcagggcccgcctaccaacggaccccctaaa
tcatggcctgaagggccgatggtgaatgccgcggccccgtcaaaccccccccagaagctg
atcccgcctcagcccacgggcagaccctcgcccgctcctccctccgttccccccgccgcc
tcccccgtaatgccccctcagacgcagtccccaggacagcctgcccagccccctcccatg
atgcttcaccagaagcagaaccgcgtaacccccatccaaaagccccgcgggctggacccg
gtggagatcctccaggagagggagtacaggctacaggcgcgtattgctcaccggatccag
gagctggagaacctgccgggctctctggccggggacctgcgcaccaaggccaccatcgag
ctcaaggccctgaggctgctgaacttccagagacagctgcgtcaggaggtggtggtgtgc
atgcgacgggacactgctttggaaacggccctcaacgccaaggcctacaagcgcagcaaa
cggcagtctctacgcgaagcccgcatcaccgagaagctggagaagcagcagaagattgaa
caggagcgtaaacgtcggcagaaacaccaggaatacctcaacagcatcctgcagcacgcc
aaggatttcaaggagtaccaccgctccatcacagcgaagctccagaaggccaccaaagcc
gtcgccacctaccacgccaacaccgagcgcgagcagaagaaggagaacgagcgcattgaa
aaggagagaatgcggaggctgatggctgaggatgaagaaggctaccggaaactcatcgac
cagaagaaagacaagcgtctggcctacctgctgcagcagacggacgagtacgtggccaac
ctcactgagctggtgcgtgcgcacaaagccgtgcaagctctcaaagagaagaagaagaag
aagaaaaagaagaagccagagactatggagggtggcgctcccgccctgggaccagatgga
gagcctttggatgagacgagccaaatgagcgacctaccggtgaaggtgatccacgttgac
agtgggaagatcctgactgggatggaagcaccgaaggctggccagctggaggcctggctc
gaaatgaacccaggatacgaagtagcgccgcgttcagacagtgaggaaagcggttcagaa
gaagaggaggaggaggaggaagaggaggaggagcaacctcattcctctgcaactcaagcg
gaagagaagaagaagattcctgaccccgacagtgaagaagtatctgaagtggacgtcctg
cacatcatcgaacacgccaagcaggatgtagatgatgagtatgggaatgcaagtttcaac
cgaggcctgcagtcctactacgccgtggcccacgctgtgactgagaaggtggacaagcag
tccacgctgctgatcaacgggcagctcaagcaataccagatcaaaggtttggagtggctg
gtgtcgctttacaacaacaacttgaatggcatcctggctgatgagatgggtctggggaaa
accatccagaccatcgccctcatcacttacctcatggagtacaagcgcctcaacgggccc
ttcctcatcatcgtacctctctcaactttatcaaactgggtctatgagtttgataagtgg
gccccgtcggtcgtgaaagtctcctacaaggggtctccagctgctcgccgtgcattcatt
cccatcttgcgcagcggcaagttcaacgtgctgctcaccacgtacgagtacattatcaaa
gacaagcaggtgctagcgaagcttcgttggaagtacatgatcgtggacgagggccaccgt
atgaagaaccaccactgtaagctgacccaggtcttgaacactcactacttggccccgcgc
cgcctgctgctcacaggcactccactgcagaacaagctgcccgagctctgggccctgctc
aacttcctcctgcccaccatcttcaagagctgcaccacgtttgagcagtggttcaacgcc
ccctttgccatgactggagagaaggtggacctgaatgaagaagagaccatcctgatcatc
cgacgtttacacaaagtgctccggcctttcctgctgcgccgactcaagaaggaagtggag
gcccagctgcccgagaaggtggagtatgtgatcaagtgcgacatgtcggcgctacagagg
gttttgtaccgacacatgcaggccaagggagtcttgctcacagatggatcagaaaaagac
aagaagggtaaaggtggcacgaagaccctgatgaacactatcatgcaactgcgaaagatt
tgcaaccacccctacatgttccagcacatcgaggagtctttctcggagcatctcggctat
tctggtggaatcgtgagtggcccggacctgtaccgctcttctgggaagtttgagctgctg
gatcgcatcctgcccaagctgagggccaccgaccacaaagtgctgcttttctgtcaaatg
acctcactcatgaccatcatggaggactactttgcctaccgtaacttcaagtacctgcgt
ctggacggaaccaccaaggcagaggaccgcggcatgctgctaaagacattcaacgacccg
gcctcgcagtactttgtgttcctgctcagcaccagggccgggggcctgggcctcaacctg
cagtcggccgacaccgtcatcatctttgacagcgactggaacccacatcaggacctgcag
gcccaggaccgagcccaccgcatcgggcagcagaacgaggtgcgcgtgctgcgcctctgc
accgtcaacagcgtggaggagaagatcctggcggccgccaagtacaagctgaacgtggac
cagaaggtcatccaggcgggcatgttcgaccagaagtcgtccggctgcgagcgtcgggcc
ttcctccaggccatcctggagcacgaggaacaggacgaggtcggggctcgaggaggctgt
cgtactaggggggcgtgggaggaagacgaagtgcccgatgacgagacggtcaatcagatg
atagccagaagtgaagaggagtttgaacagttcatgcgcatggacctggacagacgccgc
gaggacgcccgcaaccctaagaggaaaccccgtctgatggaggaggacgacatgcccagc
tggatcctgaaagacgacgccgaggtcgagaggctgacctgcgaagaggaggaggagaag
atgttcggccgcggatcgcgccaacgcaaggaagtggactacagcgactcgctcactgag
aaacagtggctgaaggccatagaggagggcaatctagaggacatcgaggaggaagtgcgt
cacaaaaagacgaccagaaagcgcaagagagaccgcgaccacgacggcgggccggccacg
cccagctccagcagcggccgcgggcgggacaaggacgaggaggtgaagaaggcgaagaaa
cgcggccgcccgcctgccgagaagctgtcccccaaccctctgtccctcaccaagaagatg
aagaagatcgtcgacgccgtcatcaagtataaggacggtaacgggcgacagctgagcgaa
gtcttcatccagctgccctctcgcaaggagctgcccgagtactacgagctcatccgcaag
ccagtggacttcagaaagatcaaggagaggatccgcagccataagtaccgcagcctgaac
gacctggagaaggacgtgatgctgctgtgtcaaaacgcccagaccttcaacctggagggg
tctctgatctacgaggactccattgtgctgcagtccgtcttcaccagcgtgagacagaag
atcgagaaggaggacgagagcgaaggggaggacagcgaggaagaggacgacgacctggac
gaaggctcggagtctgagtctcgttcagtgaaggtgaagatcaagctgagccggaaggag
aaaggggagcgcggggggaaaggacagcggcggaggggccgcggggcccgggccaaaccg
gtggtgagcgacgacgacagcgaggaggaacaggaagaggagcgttcggccagtggcagc
gaggaggactga
DBGET
integrated database retrieval system
