Etheostoma spectabile (orangethroat darter): 116702374
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Entry
116702374 CDS
T08457
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116702374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
esp03041
]
116702374
03009 Ribosome biogenesis [BR:
esp03009
]
116702374
Enzymes [BR:
esp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116702374
Spliceosome [BR:
esp03041
]
Complex A
U1 snRNP components
U1 related factors
116702374
Complex B
116702374
Ribosome biogenesis [BR:
esp03009
]
Eukaryotic type
Pre-60S particles
Helicases
116702374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116702374
NCBI-ProteinID:
XP_032392443
LinkDB
All DBs
Position
15:25391332..25397186
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AA seq
621 aa
AA seq
DB search
MPGYSDRDRGRDRDRDRGYGGGPPRFGGNRGGGGGGGGKFGNPGERLRKKQWNLDELPKF
EKNFYQEHPDVTRRSPQEVEMYRRTKTITVKGRSCPNPIAKFHEASFPSYVMDVINKQNW
TEPTPIQAQGWPLALSGQDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA
PTRELAQQVQQVAAEYGRASRLKTTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEA
GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL
KEYVQINIGALQLSANHNILQIVDVCNDAEKENKLIRLLEEIMSEKENKTIIFVETKRRC
DDLTRRMRRDGWPGMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVI
NFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLIAVLREANQAINPKLLQM
AEDRGGRSRGGRGGDYRDDRRDRYSGRRDFGSFRDRDNGRGFENGPSKTYGTNSQNGGYG
GNNSSGNGFSGASYNGNGQSNFNNQPGAFGGQNFQAQPFALAKGGAQSGASHPPFPFPQA
QAPQQHPPPLVPYPMPPQFSQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagaccgcggccgagacagagatagagacagaggatatggc
ggtggtcctcctcgctttggtggcaaccgtggtggtggcggaggaggtggaggaaagttc
ggcaatccaggtgaaaggctgcggaagaaacaatggaacctggatgagctcccaaagttt
gagaaaaacttctaccaagaacatcccgatgttactaggaggtctccgcaagaagttgaa
atgtacagaagaaccaaaacaatcacagttaaagggagaagctgcccaaatccaattgca
aagttccatgaggccagctttccatcttatgtgatggatgtgatcaacaaacagaactgg
actgaaccaacacccatccaggcccaaggctggcctctggctctcagtggccaggatatg
gtcggcattgcacagactggttctggcaagacgctttcttatttgttgcctgcaattgtg
cacatcaaccaccagcctttcctggagcgtggcgatggccctatatgcttggtgctagcc
ccgacccgtgagcttgcacagcaggtgcaacaggtggctgcagaatatggcagagcgtct
cgcctgaagactacctgtatatatggaggagctcccaagggaccccagatacgtgacctg
gaaagaggtgtcgagatctgcatcgccactccaggaaggctcattgacttccttgaggcc
ggaaagacaaacctccgtcggtgcacttatcttgtcctggatgaggcagaccgaatgctg
gacatgggctttgagccacagatccgaaaaattgttgaccaaatcaggcctgacaggcag
acactgatgtggagtgccacttggcccaaagaggttcgccagctggcagaggacttcctg
aaggagtacgtgcagatcaatattggggccctccagctcagcgccaaccacaacatcctg
caaattgtggatgtctgcaatgatgcagagaaggaaaacaagcttatccgtctacttgaa
gaaatcatgagtgagaaggagaataagaccatcatctttgtagagacaaagaggcgatgt
gatgatctcaccaggaggatgagaagggatgggtggccaggtatgggaatccatggagat
aaaagccagcaggaaagagactgggttctcaatgagttcaaatatggaaaagctccaatt
ctcattgcaactgatgttgcttccagaggtctagatgtggaagatgtgaaatttgtcatc
aactttgactaccccaacaactctgaggactatatccaccgcattggcagaacagctcgt
agccaaaagacaggcacagcttacaccttcttcactcccaacaacatgaggcaggccagt
gacctcatcgctgtgctccgcgaggccaaccaggcaatcaaccccaagctcctccaaatg
gcggaagacagaggagggcgttcaaggggaggcagaggtggtgactacagagatgaccgt
cgggataggtattctggaaggcgtgattttggcagttttagggaccgggataatggtaga
gggtttgagaacggaccaagtaaaacgtatggcacaaattcacagaatggaggctatggg
ggtaataacagcagtggcaatggcttcagcggagccagctacaatggtaatggacagtcc
aactttaacaaccaacctggagccttcggaggccagaacttccaggcccaaccgtttgct
cttgctaagggtggcgcgcagagtggcgctagtcaccccccattccccttcccccaggca
caggctccgcagcagcatcctccaccgctggtgccataccccatgcctcctcagttctct
cagtaa
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