Etheostoma spectabile (orangethroat darter): 116703068
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Entry
116703068 CDS
T08457
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
esp01001
]
116703068 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
esp04054
]
116703068 (ciita)
Enzymes [BR:
esp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
116703068 (ciita)
Protein kinases [BR:
esp01001
]
Serine/threonine kinases: Other
TAF1 family
116703068 (ciita)
Pattern recognition receptors [BR:
esp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
116703068 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
LRR_8
AAA_16
nSTAND_NTPase5
nSTAND3
AAA_22
NB-ARC
SRP54
TsaE
AAA
Motif
Other DBs
NCBI-GeneID:
116703068
NCBI-ProteinID:
XP_032393542
LinkDB
All DBs
Position
15:complement(4078835..4101160)
Genome browser
AA seq
1647 aa
AA seq
DB search
MPQFEEVLDGVRLALTWASPAEIRALLEGLVEEQIISEAYSKSLSRHQLIEGIAPTACKP
GSDMINSRGSTTYWNLQDQDQLNQVRNCGSSESTESDHNQIPSESVSPVDEHDSTWSRPK
NHPLYEYQVIHENNQKLIKELRGGPVTDKPFLNHRLSFTPRVCDYQCGLGLDHEMTELLR
SVELMQKQESDNERVDEGKLKFRKEWLEQVEEAARRIAVPLWQHWDRGQKMLLPLVPGIT
ARCATSKSKVTDSEAQCAVLNMEEETELAIACRTLDLYADNFKCTEAIADPSFTLDTEEA
QKGLCLSTFDSLPSTGLNVDHFNISGAGRNALPVQACGATDTNNNIADRLEGGLDVCWVA
DRTTDTTDDLLCLMRDVQCGTDAGFAEDIAHLFSPCTPTDTNADAQDHSFHSYEYKKDER
LELHWGAKMQHVDQDPFICPDFGVLPDDLSEYLNEDYLTVDTDVLFDSPLLNCEEINTCT
DLPMPTELLCPNSQQQEQKDEITGETPNRRKRPRAPRPQRRTNDKTPSRPKRPRTAGRSK
TKVAEPTVTQGTDQGSERSLAESVGLSPTQPILHIHPSIQFITIPDSPAYQVVQALRLSP
PVIGLPLPNTPATPTFILVPAASPPFQRQLPPLSPMGGTVAPVQMSSSPPGSLSDTASKA
MSHPCASPPSSDVSICKESPLPPSPTVLDIPSVVKDYIQEAKAHMSQICQDMESDLGLDS
HYVDVQLSKREILRSGKNTNKDLDKELVIMGDTDRQKSLLGQSHIFEGSNGDKPRRYIML
LGNAGMGKTTLIRKLCLDWSRDSIPQFDFVFSLDGKALSLTESNCSLQTLLLNLSSFAPT
CMNPDAAYGQILADPKRVLIIFDGFGELRDYEILLQTLEKDLTSSLQKDNKAQIYTVRQL
YSAILQRVLLPGCTLLLSTRPRGTASQLLRRTDSLLEVCGFTPTDIEIYLSRYFTDPGLS
ASALDSLKNCSYLHRLCWNPGLCRLVCLVLEQCKGLEVLPRTLTGLCHQVLRLKMEKDSR
NTHSQADAQSEIAVQSVEKTQTQISSSSQVTRGTKNTPKKSRAEVRTRSRSRRARRSKKQ
EKEEDDIDGEGLQSVVGEVDRTEDRELLSQLSSLAWDGVKANSSILPTGQTVSPKLKAFG
HRTGLFVSYHLRTRQVVSSGEREEGGREDREEMGTGEDGEKRGNKGRTDTENADASDKHI
LFWANPFLQSYLAGLHLSLSRTVTDRAFLQTLPFQSGQKGRRRPQREELELTQRFAVGLL
FHNRTELQRLHSYTETAFRDMVAAKQALVTKHLEGLSHGDLNPAQVLEACHYVYEVSSTH
GDGSRNSGSTRLVAHLAANLPEVLTFHGVPLKPSDVFAVQNVLERGGTKGRRFCLDLEDS
GIQIAGLRSLVGLNNINTYRACIADVITLWEQLEQSGEEGLLQGTVSKFKIHPLKATQVC
HIEHLAKLVNIHTHKKLPDSSSQSDSILAEGVPAVKELHKLEFELGPEKGPLALPKLWEL
LPGLHNLQHLDLENSKIGDKGAEKLADALVSLDSLEILNLSQNCIGDQGVTKLATTLRGL
SKLHCLSLYSNMISDEGAESLAAVLPHTASLTNLDVKYNKLTAVGAQSLGASLKNCKKMK
TLRMWNQCIPYGVFERLQQQDNRILLQ
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgccccagttcgaggaggttctggacggtgtgcggctggctctgacctgggcctctcct
gctgagatccgagctctgctggagggtttggtagaggagcagatcatctcagaggcttat
agcaagagcttgagtcgccaccaacttattgaggggattgcacctactgcatgtaaacca
ggatctgatatgataaattccagagggtctaccacctactggaaccttcaagaccaagat
caactcaaccaggtgaggaactgtggatcatcagagtctacagaatctgaccacaaccag
atcccatcggagtctgtgtcgccagtggatgagcatgacagcacatggtccaggccaaaa
aatcatcctctatatgaatatcaagtcattcacgagaataatcagaaactaattaaggaa
ttgagggggggaccagtgacggacaaaccctttctcaatcacaggctctcttttacaccg
agagtatgtgactaccaatgtgggctcggattagatcatgaaatgacagaactgctgcgt
agtgtagaattaatgcagaagcaagaaagtgataatgaaagagtagatgaggggaaattg
aaatttaggaaggagtggttagagcaggtagaggaggcagctcgaaggatagctgtccct
ctgtggcagcactgggatagaggacagaagatgttgctgcccttagttcctggtatcact
gctcgctgtgcaacaagtaaaagcaaagtgacagacagtgaagcacaatgcgctgtttta
aatatggaagaggaaacagagcttgcaattgcttgcaggacattagatttgtacgctgac
aactttaagtgtaccgaggcgatcgcagacccaagcttcacactggatacagaagaggcc
caaaaaggactctgtttatctacatttgacagtttgccatcaactggattgaacgtggat
cattttaatatctctggagcaggaagaaatgccttacctgttcaagcctgtggagctaca
gacacaaacaataacatcgcagacaggctggaaggcggtctggatgtctgctgggtagct
gacaggaccacagacacaacagacgacctgctctgtttgatgagagatgtacaatgtggc
accgatgcaggatttgcagaagacattgcacatttattttctccctgcacaccaacagac
actaatgctgacgcacaagatcactcgtttcactcttatgagtataaaaaagatgagagg
ctggagttacactggggtgccaagatgcagcacgtggatcaagacccatttatctgtcct
gactttggagttctaccagatgatttatctgaatacttgaatgaagattaccttactgtg
gacacagatgtgctctttgacagtccattgttgaattgtgaggaaatcaacacgtgcact
gatcttcccatgccaacagagctgctgtgccctaacagccagcagcaggaacagaaggat
gaaataacaggggagacacccaacaggagaaaaagacccagagctccccgaccacaacgg
cgcaccaatgacaaaacaccatctaggccaaaaaggccaagaacagcaggacgatcaaaa
accaaagtggctgagccaactgtcactcaaggcacagaccaaggatcagagaggagttta
gcagagtccgtgggcctctcccccactcaaccaatccttcatatccatccctccattcag
tttatcaccatcccagactctccagcgtatcaggtggttcaggcactgaggctctctcct
ccagttattggactaccactccccaacacacctgctacacctacgttcatattggttcct
gctgcctcaccacccttccaacgccaactgccacccctctccccaatgggcggtacagta
gcaccagtccaaatgagttcatccccgccaggatctctgtcagacaccgcaagtaaagcc
atgtctcacccttgtgcctcaccccccagcagtgacgtgtctatatgtaaggaatcccct
cttcctccgtctcccactgtccttgatattccatcggttgtaaaggactacattcaggaa
gccaaagcacacatgagtcaaatatgccaggatatggagtcagaccttggcctggattct
cattatgtggatgtgcaactgagcaagagagagattcttcgctctggaaaaaacacaaac
aaagacctggacaaggagctggtcatcatgggagatacagatcgtcaaaaaagcttgttg
gggcagagtcatatctttgaaggctcaaatggcgacaaacccagacgctacataatgcta
cttggcaatgctgggatgggaaagaccaccctgatcaggaaactgtgtctcgactggtcc
agagacagcatcccacagtttgattttgtcttctctttagacggcaaagcactgtcttta
acggagtcgaactgtagccttcagaccctcctattaaacctttcttcctttgcccctacc
tgcatgaacccagacgcagcgtacggccaaatccttgcagaccctaagcgtgtgctcatc
atttttgatgggtttggcgagttgagggactatgaaattcttctccagactttggaaaaa
gacttgacatcttcattgcagaaagacaataaagcccagatatacacagtaagacagtta
tactctgccattcttcagagggtcctccttccaggttgcactcttctgctctccactcga
ccaagaggcaccgccagccagcttctccggaggacagacagccttttggaggtttgtggc
ttcacccccacagacatagagatatatttgtcccggtacttcactgaccccggcctcagt
gcatctgctttggactccttaaaaaactgcagctatctacatcgcctctgctggaaccct
ggactgtgtcggttggtctgcttggttttagaacaatgcaaaggtttagaggtcctaccg
agaactttgaccgggctctgccatcaagtgcttcgtctgaaaatggaaaaagacagcagg
aacacacactcgcaggctgatgctcaatccgaaatagctgtgcaatcagtagaaaaaacc
cagacacaaatctcaagtagttctcaagttacaaggggtactaaaaacaccccgaagaag
tctagagcagaggttcgcactcgctctcgcagccgaagagcgaggcggtcaaaaaaacag
gagaaagaggaagatgacattgatggagaggggttgcagagtgttgtcggggaagtagat
agaacagaggacagagagttgctgtcccagctgagttctttggcctgggatggggtcaaa
gcaaactcctccatcctccccacaggacagactgtatctcccaaacttaaggcattcggc
cacaggacagggctcttcgtctcttaccatctgaggacaaggcaggttgtctcaagtggc
gagagagaggaaggaggaagagaggacagagaagaaatgggaacaggagaggatggagaa
aagaggggaaacaaggggaggacggacactgaaaacgcagatgccagtgataaacacatc
ctgttttgggccaacccttttcttcagagttacctggctgggctccatttgtctctgtca
aggactgtaacagaccgggctttcctccagaccctccctttccagtcaggccagaaggga
cgtcggcgaccacaaagggaagagctcgagctcactcagcgatttgccgttgggcttctg
ttccacaacaggacagagctgcagcggcttcactcatacacagagacagccttcagagat
atggtggccgccaagcaggctttagtaacaaaacaccttgagggtctttcccatggtgac
ttgaacccggcccaggtcctggaggcatgtcactatgtttatgaggtgagttccacacat
ggtgatggcagcagaaacagtggcagcacgcgattagttgctcacctggcagcaaatctc
ccagaagtcctgacatttcatggagttccactcaagccatcggacgtgttcgctgtgcag
aacgttcttgaaaggggtggaactaaaggtagacggttctgtttggatctggaggattct
gggatacagattgcgggactcagatccctggtggggctcaacaacatcaacacatacagg
gcatgcattgcagatgtcatcaccttatgggagcagttagagcagagtggcgaagaaggg
ctcctacaagggacggtgtccaaattcaagatccaccctctgaaggccacacaggtgtgt
cacatagagcacttggcaaagctggtgaacatacatacgcacaagaagctgccggacagt
tccagccaatcagattccatcctggccgagggagtaccagctgtcaaagagctacacaag
ctggagtttgaactcggtccagagaaaggtcccctggctcttcccaagctgtgggagctc
ctgccaggtctacataacctacagcacttagatctagagaacagtaagataggagacaaa
ggggcagagaaattggctgatgctttagtctcacttgattccctggagatactcaatctg
tcacagaattgtataggagaccagggggtgacaaaactggcaaccacgttgaggggcctg
tccaaactgcactgtttaagcctctacagtaacatgatttctgatgaaggggcggagagt
ttagcagctgtcctgccacacacggcttcgctcactaacctggatgtgaagtacaacaag
cttacagctgttggagcgcagagcctgggagccagtctgaaaaactgtaaaaaaatgaag
accttgaggatgtggaaccagtgtattccatacggagtgttcgagagacttcagcagcag
gacaaccggatccttctgcagtag
DBGET
integrated database retrieval system
